Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq137229 122 8e-23 seq55784 86.0 6e-12 >seq137229 Length=11157 Score = 122 bits (134), Expect = 8e-23 Identities = 821/1315 (62%), Gaps = 20/1315 (2%) Strand=Plus/Minus Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034 ||| ||||| | || |||| | || | ||||| ||||| ||| || | ||| Sbjct 3012 CGAGACTTATAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCTACGCTCTTCAA 2953 Query 123035 CGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094 ||| || || || ||| ||| |||| || || |||||| || || || ||||| Sbjct 2952 CGCAGGAACCAATAGGCCACAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGACGACAG 2893 Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154 |||| || ||||| || || ||| | ||||| | || ||||| | | || || Sbjct 2892 CATCGAAGGCATCTACGACACCTTGAAGCAATGCGCCCTCATCTCCAAGTCAGCTGGAGG 2833 Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGG 123214 ||| || ||| ||| | | | ||| || ||| ||| ||||| |||| Sbjct 2832 CATCGGTGTGGCCGTCAGCTGCATCAGATCAACGGGGAGCTACATTGCTGGCACCAACGG 2773 Query 123215 AATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGA 123274 | | || |||||||| |||||||| |||||||||| || | | || | || || Sbjct 2772 CAACTCCAACGGGCTCGTCCCCATGCTGAGAGTTTACAACAATACGGCACGTTATGTGGA 2713 Query 123275 CCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGA 123331 |||||| || || | | || || | || || || ||||| || |||||| |||| Sbjct 2712 CCAGGGTGGGAACAAGAGACCCGGGGCCTTCGCCATGTACCTAGAGCCCTGGCACTTTGA 2653 Query 123332 TGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGA 123391 ||||| || || | | | || |||| ||| ||| || ||| |||| | || Sbjct 2652 TGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGAGAGCCAGAGA 2593 Query 123392 TTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGT 123451 | || |||| | ||| | || || |||| ||| | ||| | | | || | Sbjct 2592 CCTTTTCTACGGCATGTGGATCCCTGACCTGTTCATGAAGAGAGTAGAGGGCAACCAAGA 2533 Query 123452 GTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTT 123511 ||||| || ||||||||| | ||| ||||| || ||| | || | |||| Sbjct 2532 CTGGTCTCTGATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTT 2473 Query 123512 TGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTA---GTCAGGTTCCGGC 123568 ||| || | ||| | || ||| || || | ||| | || ||| ||| Sbjct 2472 TGAAAAGCTCTACACCTCCTATGAGAAGGACGGGAG---GGTCAAGCGTGTGGTGAAGGC 2416 Query 123569 ACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCT 123628 | | ||| | ||||| || | || ||||| || ||||| |||||||| Sbjct 2415 TCAACAGGTGTGGCATGCCATTATTGAGTCCCAGACAGAAACTGGTACGCCATACATGCT 2356 Query 123629 CTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAG 123688 |||||||||||||||||| |||| | ||| || || |||| || || || | || Sbjct 2355 GTACAAAGACGCCTGCAACCGGAAGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAG 2296 Query 123689 TAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTT 123748 || || ||| | |||||| | ||||||| | ||| | || ||||| || ||| | Sbjct 2295 CAACCTCTGCACAGAAATTGTTGAATACACCAGCCACGACGAGGTAGCCGTCTGCAATCT 2236 Query 123749 GGCTTCGATTTGCG-TGAATCGTTGCGTCGAAAACGGCG----CTTTTAATTTCCAAACG 123803 ||| || | | ||| | || | |||| | | | | | ||| | || ||| Sbjct 2235 GGCCTC-AATCGCGCTCAACATGTACGTC-ACCCCTGAGCAGACGTTTGACTTTGAAAAA 2178 Query 123804 CTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTT 123863 || | | | || ||| | || ||||| |||||||| || || || || || || Sbjct 2177 CTAGCATCCGTGACCAAAGTAATCGTCAAGAACTTGAACAAGATCATTGAAGTAAACTTC 2118 Query 123864 TATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATT 123923 |||||| || ||||| ||| || | ||||| || | ||| | || | Sbjct 2117 TATCCTGTGCCTGAAGCAGAGAAGTCCAACAAGCGCCACAGGCCAATAGGAATTGGTGTA 2058 Query 123924 CAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAG 123983 ||||| ||||| || || || | | |||| || | |||||| ||||| || Sbjct 2057 CAAGGTTTGGCAGATGCCTTCATCCTCATGCGTTACCCATTTGAAAGCCCTGAAGCTCAG 1998 Query 123984 TTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAA 124043 |||| || | || || || || ||||| |||| |||| |||||||||||||| Sbjct 1997 CTGCTGAACATTCAGATCTTTGAGACCATTTACTACGCCGCTCTGGAGGCGAGCTGCATT 1938 Query 124044 CTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATT 124103 || || | |||| | ||||| | |||| ||| || | ||| || || Sbjct 1937 CTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCCGTCAGCAAGGGCATC 1878 Query 124104 TTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAA 124163 ||||||||||||||||| | || || || | || |||||||| | | || Sbjct 1877 CTGCAGTACGACATGTGGGAGAAGACGCCCACCGACCGGTTGGACTGGAAACTGCTGAAG 1818 Query 124164 CAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGG 124221 | | | |||| | |||||| || | ||| ||| || |||| ||||| || | Sbjct 1817 GA--GAAGATCGCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACAG 1760 Query 124222 CAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAA 124276 | |||| || || || | || |||||||| ||| |||| || | ||| | ||| Sbjct 1759 CCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAACCCTACACCAGCAA 1705 >seq55784 Length=9571 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 |||||||| || || |||||||||||||| ||||||||||||||||| | ||| ||| Sbjct 2727 GAAACCGGTACACCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 2668 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || |||| || ||||| ||| | || || | || |||| Sbjct 2667 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAGATCGTAGAGTACA 2616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451072677962280