Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq49656 118 2e-21 seq137696 100 4e-16 seq127709 87.8 3e-12 >seq49656 Length=2153 Score = 118 bits (130), Expect = 2e-21 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 8938 GGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGG 8997 |||||| ||||| || ||||| || || || ||||||||||| ||||||||| | || Sbjct 332 GGTTTTGACGATATCGAAACCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGG 273 Query 8998 GGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGAT 9057 |||||||||| ||| |||| || ||||||| ||| || ||||| |||| ||| | || Sbjct 272 GGAGCAGATGGGGTTTCCCATCAGGCCTTTCAGGGAGAAGGGAGCGCCCATCTCCACCAT 213 Query 9058 GCTCTCACCGAAGA---TGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 |||||||| || | ||| | ||| | | || || | |||| ||| | ||||| Sbjct 212 ACTCTCACCAAATAGCTTGGTA---GGATGGGTCTTCTCCAGCATGAGGCCGGGGTAGAA 156 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAG 9141 || | ||| || | ||| |||||||| Sbjct 155 CTCCAGAGCATCTATGTCACCATAGAG 129 >seq137696 Length=6824 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || ||||||| || || ||| || ||||| ||||| || ||||||||| || Sbjct 4966 GCGGTGTTGACGATGTTGAAGCCCACGCTGCCTCCGAATGTGCTCGGCTTCCAGTACTCC 4907 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| |||| | || || | ||| | || ||||||| ||| | Sbjct 4906 GGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACC 4847 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || ||||| || | | || || || || | | || | |||||| Sbjct 4846 ATGGTCTCCCCAAAGATTGCGTTAGACCTGGGCTTCTCCACCAACAGACCCGGGTAGAGC 4787 Query 9116 TCGACAGCCTCGACGTCGCCATAGA 9140 || ||||| ||||||| || |||| Sbjct 4786 TCCACAGCGTCGACGTGTCCGTAGA 4762 Score = 96.9 bits (106), Expect = 5e-15 Identities = 200/293 (68%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || |||||||| | || || ||||| || | | | | || ||||||| | ||| Sbjct 3492 CCGTCCAGCAATCTGATTGGTAAATGATTCCACAAGGTTGCCGATGCCGTGCTCGGTGAC 3433 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCT--ATGCGAA 9547 | ||| ||||| | || || | || || | || ||| || ||| ||| | | Sbjct 3432 TACGGAGGTGTTGAAGACAAACTCTTTATAGCTGTAATCTT----TCTCCTCAATGTGGA 3377 Query 9548 AATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGT 9607 | ||||||| ||||| |||||| |||| | ||| |||||||||| || || || | Sbjct 3376 AGCTGTCAGGCATCAGAGGGTGCCAGTGGTACAAGGTGTTGAACTCGGATGCAATGCGAT 3317 Query 9608 TCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGG 9666 |||||||||| || ||| | ||| || | ||| || ||||| | |||| ||||| Sbjct 3316 TCTGGTACTGGAA-GCGTTGGTTGAAGAGCAGCTCGGGATCAAACTTGAGCTTGAAGTTA 3258 Query 9667 TACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || ||||| || ||||| || || | ||| | ||| || ||||| || || Sbjct 3257 TAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 3205 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | ||| || ||||| || || || || || || || | |||| Sbjct 1915 TCACCTACTACTCCCATAGGGGTTGGGCAATCCTCTGGCACAGGGGGGAGGGTGCGCGTA 1856 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || ||| ||||||||||||| ||||||||||||||| ||| || | Sbjct 1855 TAGTAGGAGAGGTTGGAATATGCTTCCCAGCTTTTGTAGCCATAATCTGCATTGAAGGTC 1796 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 1795 GGAGGACTATCAATCA 1780 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 |||| || ||||| || || | | ||||| |||| |||||||| | | || | Sbjct 2972 ATTAACCGTGTGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCCGGGTGGACCTCCTTCAAC 2913 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||| || || | |||||| |||| ||||| ||||||||||||||||| | ||| || Sbjct 2912 ACATCACACACTCGGTTGTGCTCTCGTAGCCAGATGGTGGCGTACATCATCAGACCGGGG 2853 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 || | |||||| | || | ||||| || ||||| Sbjct 2852 ACAAGGCCAAACGCCTCGTGGCCCACAGCGAAGCG 2818 >seq127709 Length=23497 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 ||||| ||||| || || || | || || ||||||||||| |||||||| |||| || Sbjct 19417 TTCACTATGTCAAAGCCGACTTTGCCCCCAAAGGTGCTGGGCTTCCAGTAAACCGGAGAA 19476 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || ||| ||| ||| ||||| | ||| || || || |||| ||| | |||||| Sbjct 19477 CAAATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTC 19536 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || |||| || |||| | | | || | | | ||||| || | ||| | | Sbjct 19537 TCTCCAAAAATGGACCCCTGACGGGTTCTCTCCAACAGCAGGCCAGGATAAAATTCAAGA 19596 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || || | || || |||| |||| | ||| || ||||||| Sbjct 19597 GCATCAATATCACCGTAGAATCCTTCAAGCTCACGGGCAATCTCCT 19642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722238088306200