Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq49656 118 2e-21
seq137696 100 4e-16
seq127709 87.8 3e-12
>seq49656
Length=2153
Score = 118 bits (130), Expect = 2e-21
Identities = 151/207 (73%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 8938 GGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGG 8997
|||||| ||||| || ||||| || || || ||||||||||| ||||||||| | ||
Sbjct 332 GGTTTTGACGATATCGAAACCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGG 273
Query 8998 GGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGAT 9057
|||||||||| ||| |||| || ||||||| ||| || ||||| |||| ||| | ||
Sbjct 272 GGAGCAGATGGGGTTTCCCATCAGGCCTTTCAGGGAGAAGGGAGCGCCCATCTCCACCAT 213
Query 9058 GCTCTCACCGAAGA---TGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114
|||||||| || | ||| | ||| | | || || | |||| ||| | |||||
Sbjct 212 ACTCTCACCAAATAGCTTGGTA---GGATGGGTCTTCTCCAGCATGAGGCCGGGGTAGAA 156
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAG 9141
|| | ||| || | ||| ||||||||
Sbjct 155 CTCCAGAGCATCTATGTCACCATAGAG 129
>seq137696
Length=6824
Score = 100 bits (110), Expect = 4e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
||||| || ||||||| || || ||| || ||||| ||||| || ||||||||| ||
Sbjct 4966 GCGGTGTTGACGATGTTGAAGCCCACGCTGCCTCCGAATGTGCTCGGCTTCCAGTACTCC 4907
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|||||||||||| ||| |||| | || || | ||| | || ||||||| ||| |
Sbjct 4906 GGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACC 4847
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
||| |||| || ||||| || | | || || || || | | || | ||||||
Sbjct 4846 ATGGTCTCCCCAAAGATTGCGTTAGACCTGGGCTTCTCCACCAACAGACCCGGGTAGAGC 4787
Query 9116 TCGACAGCCTCGACGTCGCCATAGA 9140
|| ||||| ||||||| || ||||
Sbjct 4786 TCCACAGCGTCGACGTGTCCGTAGA 4762
Score = 96.9 bits (106), Expect = 5e-15
Identities = 200/293 (68%), Gaps = 10/293 (3%)
Strand=Plus/Minus
Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491
||| || |||||||| | || || ||||| || | | | | || ||||||| | |||
Sbjct 3492 CCGTCCAGCAATCTGATTGGTAAATGATTCCACAAGGTTGCCGATGCCGTGCTCGGTGAC 3433
Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCT--ATGCGAA 9547
| ||| ||||| | || || | || || | || ||| || ||| ||| | |
Sbjct 3432 TACGGAGGTGTTGAAGACAAACTCTTTATAGCTGTAATCTT----TCTCCTCAATGTGGA 3377
Query 9548 AATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGT 9607
| ||||||| ||||| |||||| |||| | ||| |||||||||| || || || |
Sbjct 3376 AGCTGTCAGGCATCAGAGGGTGCCAGTGGTACAAGGTGTTGAACTCGGATGCAATGCGAT 3317
Query 9608 TCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGG 9666
|||||||||| || ||| | ||| || | ||| || ||||| | |||| |||||
Sbjct 3316 TCTGGTACTGGAA-GCGTTGGTTGAAGAGCAGCTCGGGATCAAACTTGAGCTTGAAGTTA 3258
Query 9667 TACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
|| ||||| || ||||| || || | ||| | ||| || ||||| || ||
Sbjct 3257 TAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 3205
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
|||||| || || | ||| || ||||| || || || || || || || | ||||
Sbjct 1915 TCACCTACTACTCCCATAGGGGTTGGGCAATCCTCTGGCACAGGGGGGAGGGTGCGCGTA 1856
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| ||||| || || ||| ||||||||||||| ||||||||||||||| ||| || |
Sbjct 1855 TAGTAGGAGAGGTTGGAATATGCTTCCCAGCTTTTGTAGCCATAATCTGCATTGAAGGTC 1796
Query 10507 GGGGGACTGTCAATCA 10522
|| ||||| |||||||
Sbjct 1795 GGAGGACTATCAATCA 1780
Score = 86.0 bits (94), Expect = 9e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
|||| || ||||| || || | | ||||| |||| |||||||| | | || |
Sbjct 2972 ATTAACCGTGTGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCCGGGTGGACCTCCTTCAAC 2913
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
||||| || || | |||||| |||| ||||| ||||||||||||||||| | ||| ||
Sbjct 2912 ACATCACACACTCGGTTGTGCTCTCGTAGCCAGATGGTGGCGTACATCATCAGACCGGGG 2853
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881
|| | |||||| | || | ||||| || |||||
Sbjct 2852 ACAAGGCCAAACGCCTCGTGGCCCACAGCGAAGCG 2818
>seq127709
Length=23497
Score = 87.8 bits (96), Expect = 3e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001
||||| ||||| || || || | || || ||||||||||| |||||||| |||| ||
Sbjct 19417 TTCACTATGTCAAAGCCGACTTTGCCCCCAAAGGTGCTGGGCTTCCAGTAAACCGGAGAA 19476
Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061
|| || ||| ||| ||| ||||| | ||| || || || |||| ||| | ||||||
Sbjct 19477 CAAATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTC 19536
Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121
|| || || |||| || |||| | | | || | | | ||||| || | ||| | |
Sbjct 19537 TCTCCAAAAATGGACCCCTGACGGGTTCTCTCCAACAGCAGGCCAGGATAAAATTCAAGA 19596
Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167
|| || | || || |||| |||| | ||| || |||||||
Sbjct 19597 GCATCAATATCACCGTAGAATCCTTCAAGCTCACGGGCAATCTCCT 19642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 722238088306200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |