Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq137229 132 6e-26 seq55784 95.1 1e-14 seq51583 84.2 3e-11 >seq137229 Length=11157 Score = 132 bits (146), Expect = 6e-26 Identities = 834/1315 (63%), Gaps = 62/1315 (5%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| || || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 1699 TAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1758 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 ||||||||||| || |||| || || ||||| | | || | || ||| Sbjct 1759 GCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 1818 Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || || | |||||| || | || || |||| ||||||||| || || Sbjct 1819 TTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGC---GTCT---TCTCCCACATGTCGTAC 1872 Query 116077 TGGAGGAT-ACCTTG-GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAA 116131 || ||||| ||||| |||| || || || || | ||||| || ||||| |||| Sbjct 1873 TGCAGGATGCCCTTGCTGACG--GGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCA- 1929 Query 116132 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 116191 | |||| | |||||||||| || || |||| || || |||||||| || || Sbjct 1930 --GCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAA 1987 Query 116192 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCG 116251 |||| || || || | ||||| | | ||| | || || |||| | Sbjct 1988 TGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATCTG 2047 Query 116252 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 116311 | | |||||| ||||| | || ||||| | || | | | || ||||| || Sbjct 2048 CCAAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAG 2107 Query 116312 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 ||| ||||| || || || || | | | || | || ||| || || || || | Sbjct 2108 GCACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCA 2167 Query 116372 TTTCATG-AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGA 116427 ||| || ||||| | ||||| |||| ||| |||| ||| | Sbjct 2168 -CGGATGCTAGTTTTTCAAAGTCAAA------CGTCTGCTCAGGGGTGACGTACATGTTG 2220 Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487 || |||||||| |||||||| || || | ||| || | ||||| || | |||| Sbjct 2221 AGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATT 2280 Query 116488 TCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 116545 || || || | || || | ||| |||||||||| |||| || || ||| || Sbjct 2281 TCTGTGCAGAGGTTGCTGGA--CTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGT 2338 Query 116546 TACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 116605 | || || || ||||| ||||| |||||||| || || || || ||||||| | ||| | Sbjct 2339 TGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGG 2398 Query 116606 CCTTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTT 116664 | | ||| || | | | || || || ||| | | ||| |||| ||| || Sbjct 2399 CATGCCACACCTGTTGAGCCTTCACCACACGC-TTGACCCTCCCGTCCTTCTCATAGGAG 2457 Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGG 116723 |||||||| |||||||| || ||| |||| ||| ||||| || || | || Sbjct 2458 GTGTAGAGCTTTTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGG 2516 Query 116724 ACAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 116780 ||| | |||||||| ||| | |||| || | ||||||||| ||||| ||||| Sbjct 2517 ACACATCAGAGACCAGTCTTGGTTGC---CCTCTACTCTCTTCATGAACAGGTCAGGGAT 2573 Query 116781 CCAGAGCGCCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 ||| | |||| |||| || || | | | ||| || | | ||| || || | Sbjct 2574 CCACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTC 2631 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC- 116897 | ||||| ||||| | | ||| |||||| || || ||||||| |||| | ||| Sbjct 2632 AGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCG 2691 Query 116898 -----CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGC 116952 |||| ||| |||||| ||||| | ||||| ||| | || | ||| Sbjct 2692 GGTCTCTTG---TTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGC 2748 Query 116953 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT-ACGAGACTTGTTGGCTCT 117011 || || | || || | || | ||| || || || ||| | | ||| | ||| Sbjct 2749 ATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTT-GATCT 2807 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 || | || | || ||| || || || || |||| ||||| | ||||| | | | Sbjct 2808 GATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTT 2867 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131 | || ||||||| || ||||| ||| | || | |||| | ||||||||| || Sbjct 2868 CAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGA 2927 Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || |||||||| || || ||||||||||| || || | |||||| ||||| Sbjct 2928 CAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAAC 2982 >seq55784 Length=9571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||| ||||| |||| ||| ||||| ||||| Sbjct 1685 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTTCCCAGGATCTGGGCAGTGGAA 1744 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| ||||||| ||| || ||||| Sbjct 1745 GCTGTGGGCATTGGTGCCAAGAGCAGACTGTT 1776 >seq51583 Length=2687 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || | ||| || |||||||||||||| |||||||| Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCAC 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612244195733880