Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 167 4e-36
seq55784 102 1e-16
>seq137229
Length=11157
Score = 167 bits (184), Expect = 4e-36
Identities = 482/733 (66%), Gaps = 28/733 (4%)
Strand=Plus/Plus
Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943
|| || || || ||||| | ||| | | |||| | |||| || ||| ||||| |
Sbjct 2272 TCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTC 2331
Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003
|| ||||| |||| ||| ||||||| |||| | ||| | || | || |||| ||
Sbjct 2332 TTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCA 2391
Query 205004 AGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGAC 205060
| |||| ||||| | |||||| |||| |||| || | |||| | |
Sbjct 2392 ATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGAC---CCTCCCGTCCTTC 2448
Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGA 205117
|| || ||||| ||| |||| || || | || |||||| |||| ||
Sbjct 2449 TCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGGGG 2505
Query 205118 CATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGG 205177
|| | |||||||||||||||||||| || | | | | || |||| ||| ||||||
Sbjct 2506 CACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGG 2565
Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237
|| |||||||| |||||| || || || | ||| || | || | ||| ||||
Sbjct 2566 TCAGGGATCCACATGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTGTTC 2625
Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296
|| |||| ||||| ||| | | | || |||||| ||||||| ||| ||| |
Sbjct 2626 TTCTTCAGCTCCAGG-AAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAA 2684
Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356
|| || || ||||||||||||||||||||||| || | | | |||| ||||||
Sbjct 2685 GGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCT 2744
Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC------TGTTGATGGCCGAGCC 205410
|||||| || || || ||||||| | | ||||| |||| ||| | | |||
Sbjct 2745 CAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCG---- 2800
Query 205411 TTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGC 205470
|| | || | | | || |||| | || || || |||| |||||| ||| ||||
Sbjct 2801 TT--GATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGC 2858
Query 205471 GCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATA 205530
||| | | || ||| |||||||||| ||||| ||||| || | | || |
Sbjct 2859 GCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAA 2918
Query 205531 GCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGC 205589
||| | ||||| |||| | ||||| || |||| ||||||||| || |||||||
Sbjct 2919 GCAGCTGGACAGCTGTGGCCTA-TTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGG 2977
Query 205590 TGAAGCGCTTCTC 205602
|||| | ||||||
Sbjct 2978 TGAACCACTTCTC 2990
Score = 150 bits (166), Expect = 3e-31
Identities = 291/423 (69%), Gaps = 5/423 (1%)
Strand=Plus/Plus
Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158
||||| | || ||||||| | | ||||| || || ||||||| | ||||| ||
Sbjct 1571 CCTGAATGGACCCGTTGTGGCCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTC 1630
Query 204159 AC-CTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACC 204217
| ||| ||| || | ||| || || |||| ||||||||| ||||| || || |||
Sbjct 1631 TCTCTG-TCAAGTCTTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCAGAGAGGACC 1689
Query 204218 CCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGA 204277
| |||||| | | |||| ||||| | ||||||| | |||||||||||| | |||||
Sbjct 1690 CTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGG 1749
Query 204278 GCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGG 204337
|||||| ||| |||||||| || ||||| ||||| ||| | ||| |||| || |
Sbjct 1750 GCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCG 1809
Query 204338 ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397
| | | |||||| ||||||| | | |||| || |||||||||||
Sbjct 1810 ATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTCTTCTCCCACATGTCG 1869
Query 204398 AACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTC 204456
|||| | |||||| | ||||| || ||| | ||||||| || ||| || |||
Sbjct 1870 TACTGCAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTC 1928
Query 204457 TTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAAC 204516
| ||||| |||| || ||| ||| ||||| |||||||||||||||||||
Sbjct 1929 AGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAAT 1988
Query 204517 GTT 204519
|||
Sbjct 1989 GTT 1991
Score = 105 bits (116), Expect = 1e-17
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976
||| || || | ||||||| | ||||||| ||| || || || ||||| |||||
Sbjct 1261 CCAGCCATAGAAGTGCATGCTGGTTAGTTTGCCGTAGTTCGGCTCTGCGATGTGGATGTT 1320
Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035
||| |||||||| ||||||||| |||| ||| || || |||||||| ||||| |||||||
Sbjct 1321 CAGCGACTGGCTCTGGTCGATG-AAGGTGCCGCGGTCGGCGGCCATCTTGATTATGGTCT 1379
Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060
|||| || || ||||| || || ||
Sbjct 1380 TCTGGGAGATTTCCCAAACTGTTTT 1404
>seq55784
Length=9571
Score = 102 bits (112), Expect = 1e-16
Identities = 113/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973
|| ||| ||||| | ||||||| | |||||||| | | || ||||| || || ||
Sbjct 618 CTTCCAACCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGCTTGGCTCGGCAATATGGAT 677
Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032
||| || |||||||| ||||||||| | |||||| || ||||||||||| |||| | |
Sbjct 678 GTTTAGGGACTGGCTCTGGTCGATGTA-GGCGCCGCGGTCTGCGGCCATCTTGAGGACAG 736
Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060
||||||| || || |||||||| || ||
Sbjct 737 TCTTCTGGGAGATTTCCCACACAGTTTT 764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 793518243808080
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