Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq137229 167 4e-36 seq55784 102 1e-16 >seq137229 Length=11157 Score = 167 bits (184), Expect = 4e-36 Identities = 482/733 (66%), Gaps = 28/733 (4%) Strand=Plus/Plus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || || || || ||||| | ||| | | |||| | |||| || ||| ||||| | Sbjct 2272 TCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTC 2331 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || ||||| |||| ||| ||||||| |||| | ||| | || | || |||| || Sbjct 2332 TTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCA 2391 Query 205004 AGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGAC 205060 | |||| ||||| | |||||| |||| |||| || | |||| | | Sbjct 2392 ATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGAC---CCTCCCGTCCTTC 2448 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGA 205117 || || ||||| ||| |||| || || | || |||||| |||| || Sbjct 2449 TCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGGGG 2505 Query 205118 CATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGG 205177 || | |||||||||||||||||||| || | | | | || |||| ||| |||||| Sbjct 2506 CACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGG 2565 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237 || |||||||| |||||| || || || | ||| || | || | ||| |||| Sbjct 2566 TCAGGGATCCACATGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTGTTC 2625 Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 || |||| ||||| ||| | | | || |||||| ||||||| ||| ||| | Sbjct 2626 TTCTTCAGCTCCAGG-AAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAA 2684 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 || || || ||||||||||||||||||||||| || | | | |||| |||||| Sbjct 2685 GGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCT 2744 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC------TGTTGATGGCCGAGCC 205410 |||||| || || || ||||||| | | ||||| |||| ||| | | ||| Sbjct 2745 CAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCG---- 2800 Query 205411 TTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGC 205470 || | || | | | || |||| | || || || |||| |||||| ||| |||| Sbjct 2801 TT--GATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGC 2858 Query 205471 GCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATA 205530 ||| | | || ||| |||||||||| ||||| ||||| || | | || | Sbjct 2859 GCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAA 2918 Query 205531 GCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGC 205589 ||| | ||||| |||| | ||||| || |||| ||||||||| || ||||||| Sbjct 2919 GCAGCTGGACAGCTGTGGCCTA-TTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGG 2977 Query 205590 TGAAGCGCTTCTC 205602 |||| | |||||| Sbjct 2978 TGAACCACTTCTC 2990 Score = 150 bits (166), Expect = 3e-31 Identities = 291/423 (69%), Gaps = 5/423 (1%) Strand=Plus/Plus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| | | ||||| || || ||||||| | ||||| || Sbjct 1571 CCTGAATGGACCCGTTGTGGCCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTC 1630 Query 204159 AC-CTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACC 204217 | ||| ||| || | ||| || || |||| ||||||||| ||||| || || ||| Sbjct 1631 TCTCTG-TCAAGTCTTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCAGAGAGGACC 1689 Query 204218 CCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGA 204277 | |||||| | | |||| ||||| | ||||||| | |||||||||||| | ||||| Sbjct 1690 CTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGG 1749 Query 204278 GCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGG 204337 |||||| ||| |||||||| || ||||| ||||| ||| | ||| |||| || | Sbjct 1750 GCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCG 1809 Query 204338 ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397 | | | |||||| ||||||| | | |||| || ||||||||||| Sbjct 1810 ATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTCTTCTCCCACATGTCG 1869 Query 204398 AACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTC 204456 |||| | |||||| | ||||| || ||| | ||||||| || ||| || ||| Sbjct 1870 TACTGCAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTC 1928 Query 204457 TTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAAC 204516 | ||||| |||| || ||| ||| ||||| ||||||||||||||||||| Sbjct 1929 AGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAAT 1988 Query 204517 GTT 204519 ||| Sbjct 1989 GTT 1991 Score = 105 bits (116), Expect = 1e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| || || | ||||||| | ||||||| ||| || || || ||||| ||||| Sbjct 1261 CCAGCCATAGAAGTGCATGCTGGTTAGTTTGCCGTAGTTCGGCTCTGCGATGTGGATGTT 1320 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 ||| |||||||| ||||||||| |||| ||| || || |||||||| ||||| ||||||| Sbjct 1321 CAGCGACTGGCTCTGGTCGATG-AAGGTGCCGCGGTCGGCGGCCATCTTGATTATGGTCT 1379 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || ||||| || || || Sbjct 1380 TCTGGGAGATTTCCCAAACTGTTTT 1404 >seq55784 Length=9571 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | |||||||| | | || ||||| || || || Sbjct 618 CTTCCAACCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGCTTGGCTCGGCAATATGGAT 677 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||| || |||||||| ||||||||| | |||||| || ||||||||||| |||| | | Sbjct 678 GTTTAGGGACTGGCTCTGGTCGATGTA-GGCGCCGCGGTCTGCGGCCATCTTGAGGACAG 736 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||||| || || |||||||| || || Sbjct 737 TCTTCTGGGAGATTTCCCACACAGTTTT 764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793518243808080