Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq51583 102 8e-17 >seq51583 Length=2687 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || |||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct 1501 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCAAAGAACGCCAACACGTGGGAGATG 1560 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || |||||| | ||| ||| |||||||| || |||||||||||| |||||| Sbjct 1561 AAGAAGCGCTCCTCGTCCCTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGATCCACC 1620 Query 133399 T 133399 | Sbjct 1621 T 1621 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||||| |||||| || | ||||| || ||||| | ||||||||||||||| || Sbjct 1267 GTAGGTGTTGATGAGCAGGCTG--TACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 1324 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || ||||| || ||||| ||||| |||||||||||| || | ||| ||||| ||| Sbjct 1325 AACCCGTAGAAACACCGGGCCTCCGTCACCTGCACTTCCTGTGTGAAGCGCTCCACC 1381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499143113013120