Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq87129 113 3e-19
seq124617 98.7 7e-15
seq70273 86.0 5e-11
>seq87129
Length=7362
Score = 113 bits (124), Expect = 3e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | |||||| || | |||||||||||||||||||| || || | || |||
Sbjct 4242 TTTTTGTCCAAACCATAGGCGATGGCAGCAGCAGTTGGTTCATTGATGATACGCAGGACA 4183
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||| |||| | || |||||||||||||| || | || || ||||| || ||
Sbjct 4182 TTGAGGCCAGAAATTGTCCCAGCATCTTTAGTGGCCTGGCGCTGAGAGTCGTTGAAGTAG 4123
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
||||| || ||||| || ||||
Sbjct 4122 GCAGGTACCGTAATTACAGCAT 4101
Score = 93.3 bits (102), Expect = 3e-13
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||||| || ||||| || || || || | |||| ||||||||||||||||||||
Sbjct 3417 CAAAAACTGTGTTGGTGGGGTTCATGGCGACCTGATTCTTGGCTGCATCTCCAATCAGCC 3358
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642
|||| ||||| || | ||||| || || || | || || || ||||| ||||
Sbjct 3357 TCTCTGAATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 3298
Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702
| ||||||||||| |||| || | ||||| ||||| | || || || | ||| |
Sbjct 3297 TTATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCGA 3238
Query 518703 TACCAA 518708
||||||
Sbjct 3237 TACCAA 3232
>seq124617
Length=23549
Score = 98.7 bits (108), Expect = 7e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || || ||||| |||| ||||||||||||||| || || || || | | |||
Sbjct 9122 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCGTTGATGATACGAAGGACA 9181
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||| ||| | ||||||||||| ||||| || | || || || || || ||
Sbjct 9182 TTGAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 9241
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313
|||||||| || | || |||| |||||
Sbjct 9242 GCAGGAACTGTCACTACTGCATTTGTTAC 9270
>seq70273
Length=13901
Score = 86.0 bits (94), Expect = 5e-11
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579
|| |||| | ||| |||||||| || || || | || | ||||| |||||||||||||
Sbjct 9086 CACCAAATACAGTGTTGGTTGGGTTCATGGCCACCTGGTTCTTGGCAGCATCTCCAATCA 9027
Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639
| || || ||||| || | ||||| || || || | || ||||| ||||| |
Sbjct 9026 GTCTCTCGGTGTCTGTGAAGGCCACATAGCTGGGCGTGGTCCTGTTTCCTTGGTCATTGG 8967
Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699
|||| ||||| ||||| |||| || | | || ||||| | | || ||||| | ||
Sbjct 8966 CAATGATTTCCACTTTTCCATGCTGGAAGATGCCCACACAGGAATATGTGGTTCCCAGAT 8907
Query 518700 CAATACC 518706
|||| ||
Sbjct 8906 CAATGCC 8900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3772649790841258
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |