Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq87129 113 3e-19 seq124617 98.7 7e-15 seq70273 86.0 5e-11 >seq87129 Length=7362 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | |||||| || | |||||||||||||||||||| || || | || ||| Sbjct 4242 TTTTTGTCCAAACCATAGGCGATGGCAGCAGCAGTTGGTTCATTGATGATACGCAGGACA 4183 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| |||| | || |||||||||||||| || | || || ||||| || || Sbjct 4182 TTGAGGCCAGAAATTGTCCCAGCATCTTTAGTGGCCTGGCGCTGAGAGTCGTTGAAGTAG 4123 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || ||||| || |||| Sbjct 4122 GCAGGTACCGTAATTACAGCAT 4101 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || || || | |||| |||||||||||||||||||| Sbjct 3417 CAAAAACTGTGTTGGTGGGGTTCATGGCGACCTGATTCTTGGCTGCATCTCCAATCAGCC 3358 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 |||| ||||| || | ||||| || || || | || || || ||||| |||| Sbjct 3357 TCTCTGAATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 3298 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| ||||| | || || || | ||| | Sbjct 3297 TTATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCGA 3238 Query 518703 TACCAA 518708 |||||| Sbjct 3237 TACCAA 3232 >seq124617 Length=23549 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| ||||||||||||||| || || || || | | ||| Sbjct 9122 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCGTTGATGATACGAAGGACA 9181 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 9182 TTGAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 9241 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 |||||||| || | || |||| ||||| Sbjct 9242 GCAGGAACTGTCACTACTGCATTTGTTAC 9270 >seq70273 Length=13901 Score = 86.0 bits (94), Expect = 5e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || |||| | ||| |||||||| || || || | || | ||||| ||||||||||||| Sbjct 9086 CACCAAATACAGTGTTGGTTGGGTTCATGGCCACCTGGTTCTTGGCAGCATCTCCAATCA 9027 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | || || ||||| || | ||||| || || || | || ||||| ||||| | Sbjct 9026 GTCTCTCGGTGTCTGTGAAGGCCACATAGCTGGGCGTGGTCCTGTTTCCTTGGTCATTGG 8967 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 |||| ||||| ||||| |||| || | | || ||||| | | || ||||| | || Sbjct 8966 CAATGATTTCCACTTTTCCATGCTGGAAGATGCCCACACAGGAATATGTGGTTCCCAGAT 8907 Query 518700 CAATACC 518706 |||| || Sbjct 8906 CAATGCC 8900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3772649790841258