Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 201 1e-46
seq51583 87.8 2e-12
seq101000 84.2 3e-11
>seq137229
Length=11157
Score = 201 bits (222), Expect = 1e-46
Identities = 952/1487 (64%), Gaps = 34/1487 (2%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| || | | || ||||||| | |||||||| | ||
Sbjct 3074 CCGCAGCACATGCTCATGCGAGTGTCTGTTGGGATCCATGAAAATGATATTGACGCAGTC 3015
Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730
| ||||| || || | |||| | || ||||| |||||| | || || |||||
Sbjct 3014 ATCGAGACTTATAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCTACGCTCTT 2956
Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790
|||||| || || || || || ||||||| || ||| | | || | || || ||
Sbjct 2955 CAACGCAGGAACCAATAGGCCACAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGACGA 2896
Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850
||| | ||||| |||| ||| | | |||| |||| ||||| |||| |||||
Sbjct 2895 CAGCATCGAAGGCATCTACGACACCTTGAAGCAATGCGCCCTCATCTCCAAGTCAGCTGG 2836
Query 111851 TGGTATCGGGATGCACATCCATGATG--TCAGAGCCAACAAGTCTCGT-ATTAGAGGTAC 111907
|| ||||| || | || | || ||||| | ||| | | ||| || ||
Sbjct 2835 AGGCATCGGTGTGGCCGTCA--GCTGCATCAGATC-AACGGGGAGCTACATTGCTGGCAC 2779
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
|| || | || | || | | || ||||| | || | ||| || || || ||
Sbjct 2778 CAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTTTACAACAATACGGCACGTTA 2719
Query 111968 TGTAAACCAAGCTGGGC----GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023
||| |||| | |||| | | ||| || |||| | || || ||||| ||||
Sbjct 2718 TGTGGACCAGGGTGGGAACAAGAGACCCGGGGCCT-TCGCCATGTACCTAGAGCCCTGGC 2660
Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083
|| ||| | | || ||||| ||| || ||| || | |||||| | |
Sbjct 2659 ACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGAGAG 2600
Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143
| | || || |||| || | ||||| || || || |||||||||||||| |||| |
Sbjct 2599 CCAGAGACCTTTTCTACGGCATGTGGATCCCTGACCTGTTCATGAAGAGAGTAGAGGGCA 2540
Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGT 112202
| |||||||| | ||||| || || ||||| || ||| ||| | |||
Sbjct 2539 ACCAAGACTGGTCTCTGATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG- 2481
Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC-GGT 112261
|||||||||||| |||||||| || ||| | || | ||| | ||| |||
Sbjct 2480 GAGGAGTTTGAAAAGCTCTACACCTCCTATGAGAAGGACGGGAGGGTCAA-GCGTGTGGT 2422
Query 112262 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321
| ||| | |||||| | || ||| | |||| || || || |||||||| |||||
Sbjct 2421 GAAGGCTCAACAGGTGTGGCATGCCATTATTGAGTCCCAGACAGAAACTGGTACGCCATA 2362
Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381
||||| |||||||||||||| |||| ||||| || || ||||| |||| |||||
Sbjct 2361 CATGCTGTACAAAGACGCCTGCAACCGGAAGAGCAACCACCAGAATCTGGGCACCATCAA 2302
Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441
| ||||||||| |||||||| | |||| || | | || ||| || || ||
Sbjct 2301 GTCCAGCAACCTCTGCACAGAAATTGTTGAATACACCAGCCACGACGAGGTAGCCGTCTG 2242
Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 112501
|| || || |||||||| ||| || ||| || || ||| |||| ||||| |
Sbjct 2241 CAATCTGGCCTCAATCGCGCTCAACATGTACGTCACCCCTGAG---CAGACGTTTGACTT 2185
Query 112502 TGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAG 112561
||||||||| || || ||| || || ||| | |||| | |||||
Sbjct 2184 TGAAAAACTAGCATCCGTGACCAAAGTAATCGTCAAGAACTTGAACAAGATCATTGAAGT 2125
Query 112562 AAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618
||| || || || || ||| || || || || | | | ||| | ||||| ||
Sbjct 2124 AAACTTCTATCCTGTGCCTGA---AGCAGAGAAGTCCAACAAGCGCCACAGGCCAATAGG 2068
Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 112678
| ||||| |||||| | || |||| ||||| || || || ||||||| |
Sbjct 2067 AATTGGTGTACAAGGTTTGGCAGATGCCTTCATCCTCATGCGTTACCCATTTGAAAGCCC 2008
Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738
||||| || | || | || |||||||| || || |||||||||| |||||
Sbjct 2007 TGAAGCTCAGCTGCTGAACATTCAGATCTTTGAGACCATTTACTACGCCGCTCTGGAGGC 1948
Query 112739 GAGTTCGGAGT-TGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797
||| | | | | |||| | | || || || || || | || || ||||| | |
Sbjct 1947 GAGCT-GCATTCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCC--CGT 1891
Query 112798 CA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGACT 112854
|| |||||| | || || | || ||||||| || || | ||| | | ||||
Sbjct 1890 CAGCAAGGGCATCCTGCAGTACGACATGTGGG-AGAAGACGCCCACCGACCGGTTGGACT 1832
Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914
|| | || ||||| ||| || | || | | |||||||| || |||| |
Sbjct 1831 GGAAACTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCC 1772
Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974
| ||||| |||||||||||||| || ||| |||| || || || | | | ||||||||||
Sbjct 1771 CGATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAACCCTACA 1712
Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034
| | |||||||| | || |||| | ||||||||| ||| ||||| ||||
Sbjct 1711 CCAGCAACATCTACACCCGCAGGGTCCTCTCTGGAGAGTTTCAGATCGTCAATCCTCATC 1652
Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081
| | | ||| | | ||||| || || ||| | |||| ||||||
Sbjct 1651 TGCTCAAAGACTTGACAGAGAGAGGACTGTGGAGCGAGGAGATGAAG 1605
>seq51583
Length=2687
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263
|| ||||| |||||||||||||||||||| | | || | ||||| |||||| ||||
Sbjct 950 GTGGAGGGAATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGC 891
Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316
|| ||||| || || ||||||||||||||| ||| | ||||||| |||
Sbjct 890 CTGATGCCTGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGGTACT 838
>seq101000
Length=9675
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239
|||||| | | || ||||| || ||||| |||||||||||||| || ||| ||
Sbjct 764 GAGCGAATTGTAGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCTGCC 823
Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298
|| ||||||||||||||| |||| | ||||| || || || |||||||||||| ||
Sbjct 824 ATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 619464500898960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |