Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq137229 201 1e-46 seq51583 87.8 2e-12 seq101000 84.2 3e-11 >seq137229 Length=11157 Score = 201 bits (222), Expect = 1e-46 Identities = 952/1487 (64%), Gaps = 34/1487 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || | | || ||||||| | |||||||| | || Sbjct 3074 CCGCAGCACATGCTCATGCGAGTGTCTGTTGGGATCCATGAAAATGATATTGACGCAGTC 3015 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| || || | |||| | || ||||| |||||| | || || ||||| Sbjct 3014 ATCGAGACTTATAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCTACGCTCTT 2956 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || || || ||||||| || ||| | | || | || || || Sbjct 2955 CAACGCAGGAACCAATAGGCCACAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGACGA 2896 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||| | ||||| |||| ||| | | |||| |||| ||||| |||| ||||| Sbjct 2895 CAGCATCGAAGGCATCTACGACACCTTGAAGCAATGCGCCCTCATCTCCAAGTCAGCTGG 2836 Query 111851 TGGTATCGGGATGCACATCCATGATG--TCAGAGCCAACAAGTCTCGT-ATTAGAGGTAC 111907 || ||||| || | || | || ||||| | ||| | | ||| || || Sbjct 2835 AGGCATCGGTGTGGCCGTCA--GCTGCATCAGATC-AACGGGGAGCTACATTGCTGGCAC 2779 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || | || | || | | || ||||| | || | ||| || || || || Sbjct 2778 CAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTTTACAACAATACGGCACGTTA 2719 Query 111968 TGTAAACCAAGCTGGGC----GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 ||| |||| | |||| | | ||| || |||| | || || ||||| |||| Sbjct 2718 TGTGGACCAGGGTGGGAACAAGAGACCCGGGGCCT-TCGCCATGTACCTAGAGCCCTGGC 2660 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 || ||| | | || ||||| ||| || ||| || | |||||| | | Sbjct 2659 ACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGAGAG 2600 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | | || || |||| || | ||||| || || || |||||||||||||| |||| | Sbjct 2599 CCAGAGACCTTTTCTACGGCATGTGGATCCCTGACCTGTTCATGAAGAGAGTAGAGGGCA 2540 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGT 112202 | |||||||| | ||||| || || ||||| || ||| ||| | ||| Sbjct 2539 ACCAAGACTGGTCTCTGATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG- 2481 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC-GGT 112261 |||||||||||| |||||||| || ||| | || | ||| | ||| ||| Sbjct 2480 GAGGAGTTTGAAAAGCTCTACACCTCCTATGAGAAGGACGGGAGGGTCAA-GCGTGTGGT 2422 Query 112262 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | ||| | |||||| | || ||| | |||| || || || |||||||| ||||| Sbjct 2421 GAAGGCTCAACAGGTGTGGCATGCCATTATTGAGTCCCAGACAGAAACTGGTACGCCATA 2362 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||||| |||||||||||||| |||| ||||| || || ||||| |||| ||||| Sbjct 2361 CATGCTGTACAAAGACGCCTGCAACCGGAAGAGCAACCACCAGAATCTGGGCACCATCAA 2302 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 | ||||||||| |||||||| | |||| || | | || ||| || || || Sbjct 2301 GTCCAGCAACCTCTGCACAGAAATTGTTGAATACACCAGCCACGACGAGGTAGCCGTCTG 2242 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 112501 || || || |||||||| ||| || ||| || || ||| |||| ||||| | Sbjct 2241 CAATCTGGCCTCAATCGCGCTCAACATGTACGTCACCCCTGAG---CAGACGTTTGACTT 2185 Query 112502 TGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAG 112561 ||||||||| || || ||| || || ||| | |||| | ||||| Sbjct 2184 TGAAAAACTAGCATCCGTGACCAAAGTAATCGTCAAGAACTTGAACAAGATCATTGAAGT 2125 Query 112562 AAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 ||| || || || || ||| || || || || | | | ||| | ||||| || Sbjct 2124 AAACTTCTATCCTGTGCCTGA---AGCAGAGAAGTCCAACAAGCGCCACAGGCCAATAGG 2068 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 112678 | ||||| |||||| | || |||| ||||| || || || ||||||| | Sbjct 2067 AATTGGTGTACAAGGTTTGGCAGATGCCTTCATCCTCATGCGTTACCCATTTGAAAGCCC 2008 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 ||||| || | || | || |||||||| || || |||||||||| ||||| Sbjct 2007 TGAAGCTCAGCTGCTGAACATTCAGATCTTTGAGACCATTTACTACGCCGCTCTGGAGGC 1948 Query 112739 GAGTTCGGAGT-TGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 ||| | | | | |||| | | || || || || || | || || ||||| | | Sbjct 1947 GAGCT-GCATTCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCC--CGT 1891 Query 112798 CA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGACT 112854 || |||||| | || || | || ||||||| || || | ||| | | |||| Sbjct 1890 CAGCAAGGGCATCCTGCAGTACGACATGTGGG-AGAAGACGCCCACCGACCGGTTGGACT 1832 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 || | || ||||| ||| || | || | | |||||||| || |||| | Sbjct 1831 GGAAACTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCC 1772 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | ||||| |||||||||||||| || ||| |||| || || || | | | |||||||||| Sbjct 1771 CGATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAACCCTACA 1712 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATC 113034 | | |||||||| | || |||| | ||||||||| ||| ||||| |||| Sbjct 1711 CCAGCAACATCTACACCCGCAGGGTCCTCTCTGGAGAGTTTCAGATCGTCAATCCTCATC 1652 Query 113035 TCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 | | | ||| | | ||||| || || ||| | |||| |||||| Sbjct 1651 TGCTCAAAGACTTGACAGAGAGAGGACTGTGGAGCGAGGAGATGAAG 1605 >seq51583 Length=2687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| |||||||||||||||||||| | | || | ||||| |||||| |||| Sbjct 950 GTGGAGGGAATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGC 891 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 || ||||| || || ||||||||||||||| ||| | ||||||| ||| Sbjct 890 CTGATGCCTGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGGTACT 838 >seq101000 Length=9675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 |||||| | | || ||||| || ||||| |||||||||||||| || ||| || Sbjct 764 GAGCGAATTGTAGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCTGCC 823 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || ||||||||||||||| |||| | ||||| || || || |||||||||||| || Sbjct 824 ATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619464500898960