Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 96.9 4e-15
seq103392 89.7 6e-13
seq55784 87.8 2e-12
seq122294 84.2 3e-11
>seq137229
Length=11157
Score = 96.9 bits (106), Expect = 4e-15
Identities = 263/392 (67%), Gaps = 8/392 (2%)
Strand=Plus/Plus
Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329
|||| || || ||| || || || || |||||||| || | |||||| | | ||
Sbjct 2207 TGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGG 2266
Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389
||||||| | |||||| || || | |||| ||| ||| |||| |||| || |
Sbjct 2267 TGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGT 2326
Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449
| || |||||| || || || || ||||||||||| ||||||||||| ||||| |
Sbjct 2327 TGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGG 2386
Query 110450 ACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC 110508
||| | |||||| | ||| || | | | | || || || | || |||
Sbjct 2387 ACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGC-TTGACCCTCCCGTCC 2445
Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTT 110567
| ||| || |||||| | | ||||| |||| || | ||| || || |||
Sbjct 2446 TTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCAC-TCGTCCAG-CCCGG 2503
Query 110568 CGC-CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626
|| || || |||||| | || ||||| | | |||| || |||||||||||||
Sbjct 2504 GGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACA 2563
Query 110627 GGTCAGGAATCCACATCGCCG-AGAAAAGGTC 110657
||||||| |||||||| |||| ||||||||||
Sbjct 2564 GGTCAGGGATCCACAT-GCCGTAGAAAAGGTC 2594
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811
||||||||| | ||||||||||||| |||| |||||||| ||||| || || |||||
Sbjct 1698 GTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 1757
Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844
||||||||||| || |||| || ||||||||
Sbjct 1758 GGCTGTGGGCATCGGGGCCAGCAGCAGACTGTT 1790
>seq103392
Length=11924
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 3659 TAGCTCAGCTGGCTAGAGCGTGGTGCTAATAACGCCAAGGTCACGGGTTCGATCCCCGT 3717
>seq55784
Length=9571
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811
||||||||| | ||||||| || | |||| ||||| || ||||| || ||||||||
Sbjct 1684 GTAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTTCCCAGGATCTGGGCAGTGGA 1743
Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844
|||||||||||| || |||| ||| ||||||||
Sbjct 1744 AGCTGTGGGCATTGGTGCCAAGAGCAGACTGTT 1776
>seq122294
Length=20927
Score = 84.2 bits (92), Expect = 3e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||
Sbjct 267 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGCGGGTTCGATACCCGT 325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587763497195400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |