Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq137229 96.9 4e-15 seq103392 89.7 6e-13 seq55784 87.8 2e-12 seq122294 84.2 3e-11 >seq137229 Length=11157 Score = 96.9 bits (106), Expect = 4e-15 Identities = 263/392 (67%), Gaps = 8/392 (2%) Strand=Plus/Plus Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| || || ||| || || || || |||||||| || | |||||| | | || Sbjct 2207 TGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGG 2266 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 ||||||| | |||||| || || | |||| ||| ||| |||| |||| || | Sbjct 2267 TGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGT 2326 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | || |||||| || || || || ||||||||||| ||||||||||| ||||| | Sbjct 2327 TGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGG 2386 Query 110450 ACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC 110508 ||| | |||||| | ||| || | | | | || || || | || ||| Sbjct 2387 ACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGC-TTGACCCTCCCGTCC 2445 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTT 110567 | ||| || |||||| | | ||||| |||| || | ||| || || ||| Sbjct 2446 TTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCAC-TCGTCCAG-CCCGG 2503 Query 110568 CGC-CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626 || || || |||||| | || ||||| | | |||| || ||||||||||||| Sbjct 2504 GGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACA 2563 Query 110627 GGTCAGGAATCCACATCGCCG-AGAAAAGGTC 110657 ||||||| |||||||| |||| |||||||||| Sbjct 2564 GGTCAGGGATCCACAT-GCCGTAGAAAAGGTC 2594 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||||||||||| |||| |||||||| ||||| || || ||||| Sbjct 1698 GTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 1757 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||||||||| || |||| || |||||||| Sbjct 1758 GGCTGTGGGCATCGGGGCCAGCAGCAGACTGTT 1790 >seq103392 Length=11924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 3659 TAGCTCAGCTGGCTAGAGCGTGGTGCTAATAACGCCAAGGTCACGGGTTCGATCCCCGT 3717 >seq55784 Length=9571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||||| || | |||| ||||| || ||||| || |||||||| Sbjct 1684 GTAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTTCCCAGGATCTGGGCAGTGGA 1743 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 |||||||||||| || |||| ||| |||||||| Sbjct 1744 AGCTGTGGGCATTGGTGCCAAGAGCAGACTGTT 1776 >seq122294 Length=20927 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||| Sbjct 267 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGCGGGTTCGATACCCGT 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587763497195400