Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 197 2e-45
seq55784 93.3 5e-14
>seq137229
Length=11157
Score = 197 bits (218), Expect = 2e-45
Identities = 649/991 (65%), Gaps = 31/991 (3%)
Strand=Plus/Plus
Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900
|||||| |||| | ||| || || ||| | | || |||| ||||| |||||
Sbjct 1605 CTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTGAC 1664
Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960
||| ||||||||| | |||| || | |||||||| | ||||||||||| |
Sbjct 1665 GATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCGAT 1724
Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020
| | || || || |||| ||| || |||||||||||||| ||||| || |||| || ||
Sbjct 1725 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAG 1784
Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079
|||||| | | || | | ||| ||||| || | | |||||| | |
Sbjct 1785 ACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGGTC 1844
Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137
| | || || || ||||||| || | || || | |||||| |||| ||||| ||
Sbjct 1845 GGTGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCC 1901
Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197
|| | ||||| |||| || | | | |||| |||||||||||||| | ||
Sbjct 1902 TTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGC 1961
Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257
|| || ||||| |||||||| || |||| | || |||||| |||||||
Sbjct 1962 GTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGG 2021
Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317
||| || | || || |||| || | |||||| ||||| | || || || |||||
Sbjct 2022 GTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGTG 2081
Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCG 106374
||| | || ||||| | | | ||| || ||||| || ||| |||||||
Sbjct 2082 GCGCTTGTTGGACTT---CTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTT 2138
Query 106375 GTTTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAAAAGT 106431
||| | || ||| || || | || | | ||| ||||||||| | ||||| ||
Sbjct 2139 GTTCAAGTTCTTG---ACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTCAAACGT 2195
Query 106432 GCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGT 106491
| ||| |||| ||| | || |||||||| |||| |||||| || ||
Sbjct 2196 CTG---CTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTAC 2252
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
||| || | ||||| || | ||||||||| || | |||| ||| || || ||
Sbjct 2253 CTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCC 2312
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
|| ||||| ||||| ||||| |||||| || || ||||| |||||||| ||||| ||
Sbjct 2313 CAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACC 2372
Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCG-GCGGCTGGTACAATGGCGT 106670
|| || ||||| |||| | ||| || | |||||| | | | || || || |
Sbjct 2373 AGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGC-T 2431
Query 106671 TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 106729
|| ||| || ||| ||| || |||||||| |||||||||||| ||| | ||
Sbjct 2432 TGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTC-CCCCCAGCAC 2490
Query 106730 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCA 106786
||| || || || || || ||||| | |||||||| ||| | ||||
Sbjct 2491 TCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGC---CCTCT 2547
Query 106787 ACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817
|| | ||||||||| ||||| || |||||||
Sbjct 2548 ACTCTCTTCATGAACAGGTCAGGGATCCACA 2578
>seq55784
Length=9571
Score = 93.3 bits (102), Expect = 5e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
|||||| || |||||||||| || ||||| |||| ||| || || || ||
Sbjct 2602 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 2661
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
|| ||||| ||||| ||||| ||||||| || ||||||||||||||||| || || ||
Sbjct 2662 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACC 2721
Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647
|| || ||||| |||| | || || | ||||||
Sbjct 2722 GGTTTCTGTCTGAGACTCAATGATGGCGTGCCACAC 2757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588766228651320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |