Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq137229 197 2e-45 seq55784 93.3 5e-14 >seq137229 Length=11157 Score = 197 bits (218), Expect = 2e-45 Identities = 649/991 (65%), Gaps = 31/991 (3%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || |||| ||||| ||||| Sbjct 1605 CTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTGAC 1664 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | |||| || | |||||||| | ||||||||||| | Sbjct 1665 GATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCGAT 1724 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || |||||||||||||| ||||| || |||| || || Sbjct 1725 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAG 1784 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 |||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 1785 ACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGGTC 1844 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137 | | || || || ||||||| || | || || | |||||| |||| ||||| || Sbjct 1845 GGTGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCC 1901 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 || | ||||| |||| || | | | |||| |||||||||||||| | || Sbjct 1902 TTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGC 1961 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 || || ||||| |||||||| || |||| | || |||||| ||||||| Sbjct 1962 GTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGG 2021 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 ||| || | || || |||| || | |||||| ||||| | || || || ||||| Sbjct 2022 GTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGTG 2081 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCG 106374 ||| | || ||||| | | | ||| || ||||| || ||| ||||||| Sbjct 2082 GCGCTTGTTGGACTT---CTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTT 2138 Query 106375 GTTTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAAAAGT 106431 ||| | || ||| || || | || | | ||| ||||||||| | ||||| || Sbjct 2139 GTTCAAGTTCTTG---ACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTCAAACGT 2195 Query 106432 GCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGT 106491 | ||| |||| ||| | || |||||||| |||| |||||| || || Sbjct 2196 CTG---CTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTAC 2252 Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 ||| || | ||||| || | ||||||||| || | |||| ||| || || || Sbjct 2253 CTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCC 2312 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| |||||| || || ||||| |||||||| ||||| || Sbjct 2313 CAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACC 2372 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCG-GCGGCTGGTACAATGGCGT 106670 || || ||||| |||| | ||| || | |||||| | | | || || || | Sbjct 2373 AGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGC-T 2431 Query 106671 TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 106729 || ||| || ||| ||| || |||||||| |||||||||||| ||| | || Sbjct 2432 TGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTC-CCCCCAGCAC 2490 Query 106730 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCA 106786 ||| || || || || || ||||| | |||||||| ||| | |||| Sbjct 2491 TCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGC---CCTCT 2547 Query 106787 ACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 || | ||||||||| ||||| || ||||||| Sbjct 2548 ACTCTCTTCATGAACAGGTCAGGGATCCACA 2578 >seq55784 Length=9571 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||||||| || ||||| |||| ||| || || || || Sbjct 2602 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 2661 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || ||||||||||||||||| || || || Sbjct 2662 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACC 2721 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 || || ||||| |||| | || || | |||||| Sbjct 2722 GGTTTCTGTCTGAGACTCAATGATGGCGTGCCACAC 2757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588766228651320