Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq120691 109 4e-18
seq87129 109 4e-18
seq124617 104 2e-16
seq70273 104 2e-16
>seq120691
Length=7194
Score = 109 bits (120), Expect = 4e-18
Identities = 388/604 (64%), Gaps = 2/604 (0%)
Strand=Plus/Minus
Query 551982 TTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCT 552041
|||||||| || || | | || | || |||||||| ||||| || | ||
Sbjct 4660 TTTGAGGGCATCGACTTCTACACCTCCATCACGAGGGCCCGCTTTGAGGAGCTCAACTCG 4601
Query 552042 GATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGAT 552101
|| ||||| || |||| | || ||||| || | | | |||| | ||| | |||
Sbjct 4600 GAGCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTGCAAGATGCCAAGTTGGAT 4541
Query 552102 AAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161
||||| || | |||||||| || | ||||| || || ||||||||||| ||||| |
Sbjct 4540 AAATCAAAGATCCATGAAATCGTCTTGGTTGGCGGCTCCACAAGAATTCCCAAAATCCAG 4481
Query 552162 GAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGA 552220
| | || || || ||| ||||| | | || | || | || | || ||||||||
Sbjct 4480 AAGCTCTTGCAGGACTGTTTT-AATGGCAGAGAACTGAACAAGAGCATCAACCCAGATGA 4422
Query 552221 GGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAA 552280
|| || || || || || ||| | || || ||||| || || | || || ||
Sbjct 4421 AGCGGTGGCGTACGGCGCAGCAGTCCAGGCTGCTATCCTCATGGGTGACACCTCAGAGAA 4362
Query 552281 ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGG 552340
| ||| || | | || | || || |||| || ||||| || | || || | ||
Sbjct 4361 CGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATTGAGACCGCAGG 4302
Query 552341 AGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGT 552400
|| ||||||| ||| ||| | |||| || || || |||| || | | | |
Sbjct 4301 TGGAGTTATGACGCCTCTCATCAAACGAAACACCACCATCCCTTCCAAGCAGACCCAGAT 4242
Query 552401 ATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAG 552460
|| || || ||||| || ||||| | | ||| ||||| | | ||| || || ||
Sbjct 4241 CTTCTCCACATATTCGGACAATCAGCCGGGTGTGCTGATTCAGGTGTATGAGGGTGAGAG 4182
Query 552461 AAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGC 552520
| | || || || || || | | || | ||| | | |||||| ||||||||
Sbjct 4181 AGCCATGACCAAGGACAACAACCTCTTGGGCAAGTTTGAGCTCACAGGTATCCCTCCTGC 4122
Query 552521 TCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAA 552580
||| || ||||| || || | || || || ||||| ||||| ||||| || ||| ||||
Sbjct 4121 TCCCCGAGGAGTGCCACAGGTGGAGGTCACATTCGACATCGACGCCAACGGCATTCTGAA 4062
Query 552581 TGTG 552584
|||
Sbjct 4061 CGTG 4058
Score = 93.3 bits (102), Expect = 3e-13
Identities = 133/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
||||||| || || || ||||| ||||| |||||||| || | ||||| || ||||| |
Sbjct 5100 ATGCAGTCATCACAGTTCCAGCTTATTTCAATGACTCTCAGAGGCAAGCCACCAAAGACG 5041
Query 550458 CTGGACGT-ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516
| || ||| || | ||||| |||||||| || || ||||| || || || || || ||
Sbjct 5040 CCGG-CGTGATCTCAGGACTGAATGTTCTCCGGATCATCAACGAGCCCACAGCAGCCGCC 4982
Query 550517 CTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGT 550576
| || || || || || ||| ||| ||| | ||||| ||||||||||||
Sbjct 4981 ATCGCCTACGGCCTGGACAAAGGTAAAAGAGGAGAGCGCAATGTGCTCATCTTTGATCTC 4922
Query 550577 GGAGG 550581
|||||
Sbjct 4921 GGAGG 4917
>seq87129
Length=7362
Score = 109 bits (120), Expect = 4e-18
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| ||||| || ||||| || || || || ||||| || || || || ||||||||||
Sbjct 4101 ATGCTGTAATTACGGTACCTGCCTACTTCAACGACTCTCAGCGCCAGGCCACTAAAGATG 4160
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| ||| |||| || ||||| || ||||| ||||||||||| |||||||||||
Sbjct 4161 CTGGGACAATTTCTGGCCTCAATGTCCTGCGTATCATCAATGAACCAACTGCTGCTGCCA 4220
Query 550518 TTGCATATGG 550527
| || |||||
Sbjct 4221 TCGCCTATGG 4230
>seq124617
Length=23549
Score = 104 bits (114), Expect = 2e-16
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||||||| | || || || || || || |||||||| || || || || || |||||||
Sbjct 9263 ATGCAGTAGTGACAGTTCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 9204
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| || ||| |||| || ||||| |||||||| ||||| || || |||||||||||
Sbjct 9203 CAGGGACCATTTCTGGGCTCAATGTCCTTCGTATCATCAACGAGCCAACTGCTGCTGCTA 9144
Query 550518 TTGCATATGGACTTGATAAA 550537
|||| ||||| || || |||
Sbjct 9143 TTGCTTATGGCCTGGACAAA 9124
>seq70273
Length=13901
Score = 104 bits (114), Expect = 2e-16
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
||||||| || || || || || || || |||||||| || |||||||| || |||||||
Sbjct 9575 ATGCAGTCATCACCGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGATG 9634
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| || |||| ||||| || || || || ||||| || || |||||||| ||
Sbjct 9635 CTGGAGTCATCTCTGGGCTTAACGTGCTGCGCATCATCAACGAGCCCACTGCTGCAGCCA 9694
Query 550518 TTGCATATGGACTTGATAAA 550537
|||| ||||| || || |||
Sbjct 9695 TTGCTTATGGCCTGGACAAA 9714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4020586291394570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |