Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq120691 109 4e-18 seq87129 109 4e-18 seq124617 104 2e-16 seq70273 104 2e-16 >seq120691 Length=7194 Score = 109 bits (120), Expect = 4e-18 Identities = 388/604 (64%), Gaps = 2/604 (0%) Strand=Plus/Minus Query 551982 TTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCT 552041 |||||||| || || | | || | || |||||||| ||||| || | || Sbjct 4660 TTTGAGGGCATCGACTTCTACACCTCCATCACGAGGGCCCGCTTTGAGGAGCTCAACTCG 4601 Query 552042 GATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGAT 552101 || ||||| || |||| | || ||||| || | | | |||| | ||| | ||| Sbjct 4600 GAGCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTGCAAGATGCCAAGTTGGAT 4541 Query 552102 AAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 ||||| || | |||||||| || | ||||| || || ||||||||||| ||||| | Sbjct 4540 AAATCAAAGATCCATGAAATCGTCTTGGTTGGCGGCTCCACAAGAATTCCCAAAATCCAG 4481 Query 552162 GAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGA 552220 | | || || || ||| ||||| | | || | || | || | || |||||||| Sbjct 4480 AAGCTCTTGCAGGACTGTTTT-AATGGCAGAGAACTGAACAAGAGCATCAACCCAGATGA 4422 Query 552221 GGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAA 552280 || || || || || || ||| | || || ||||| || || | || || || Sbjct 4421 AGCGGTGGCGTACGGCGCAGCAGTCCAGGCTGCTATCCTCATGGGTGACACCTCAGAGAA 4362 Query 552281 ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGG 552340 | ||| || | | || | || || |||| || ||||| || | || || | || Sbjct 4361 CGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATTGAGACCGCAGG 4302 Query 552341 AGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGT 552400 || ||||||| ||| ||| | |||| || || || |||| || | | | | Sbjct 4301 TGGAGTTATGACGCCTCTCATCAAACGAAACACCACCATCCCTTCCAAGCAGACCCAGAT 4242 Query 552401 ATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAG 552460 || || || ||||| || ||||| | | ||| ||||| | | ||| || || || Sbjct 4241 CTTCTCCACATATTCGGACAATCAGCCGGGTGTGCTGATTCAGGTGTATGAGGGTGAGAG 4182 Query 552461 AAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGC 552520 | | || || || || || | | || | ||| | | |||||| |||||||| Sbjct 4181 AGCCATGACCAAGGACAACAACCTCTTGGGCAAGTTTGAGCTCACAGGTATCCCTCCTGC 4122 Query 552521 TCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAA 552580 ||| || ||||| || || | || || || ||||| ||||| ||||| || ||| |||| Sbjct 4121 TCCCCGAGGAGTGCCACAGGTGGAGGTCACATTCGACATCGACGCCAACGGCATTCTGAA 4062 Query 552581 TGTG 552584 ||| Sbjct 4061 CGTG 4058 Score = 93.3 bits (102), Expect = 3e-13 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || ||||| ||||| |||||||| || | ||||| || ||||| | Sbjct 5100 ATGCAGTCATCACAGTTCCAGCTTATTTCAATGACTCTCAGAGGCAAGCCACCAAAGACG 5041 Query 550458 CTGGACGT-ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 | || ||| || | ||||| |||||||| || || ||||| || || || || || || Sbjct 5040 CCGG-CGTGATCTCAGGACTGAATGTTCTCCGGATCATCAACGAGCCCACAGCAGCCGCC 4982 Query 550517 CTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGT 550576 | || || || || || ||| ||| ||| | ||||| |||||||||||| Sbjct 4981 ATCGCCTACGGCCTGGACAAAGGTAAAAGAGGAGAGCGCAATGTGCTCATCTTTGATCTC 4922 Query 550577 GGAGG 550581 ||||| Sbjct 4921 GGAGG 4917 >seq87129 Length=7362 Score = 109 bits (120), Expect = 4e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || ||||| || || || || ||||| || || || || |||||||||| Sbjct 4101 ATGCTGTAATTACGGTACCTGCCTACTTCAACGACTCTCAGCGCCAGGCCACTAAAGATG 4160 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 4161 CTGGGACAATTTCTGGCCTCAATGTCCTGCGTATCATCAATGAACCAACTGCTGCTGCCA 4220 Query 550518 TTGCATATGG 550527 | || ||||| Sbjct 4221 TCGCCTATGG 4230 >seq124617 Length=23549 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||||||| | || || || || || || |||||||| || || || || || ||||||| Sbjct 9263 ATGCAGTAGTGACAGTTCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 9204 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| |||||||| ||||| || || ||||||||||| Sbjct 9203 CAGGGACCATTTCTGGGCTCAATGTCCTTCGTATCATCAACGAGCCAACTGCTGCTGCTA 9144 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 9143 TTGCTTATGGCCTGGACAAA 9124 >seq70273 Length=13901 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||||| Sbjct 9575 ATGCAGTCATCACCGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGATG 9634 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| ||||| || || || || ||||| || || |||||||| || Sbjct 9635 CTGGAGTCATCTCTGGGCTTAACGTGCTGCGCATCATCAACGAGCCCACTGCTGCAGCCA 9694 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 9695 TTGCTTATGGCCTGGACAAA 9714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4020586291394570