Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq60745 183 2e-41 seq77726 118 9e-22 seq58637 86.0 5e-12 >seq60745 Length=27421 Score = 183 bits (202), Expect = 2e-41 Identities = 145/174 (83%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| |||||| |||||||| |||||||| | ||||||||||||||| || || Sbjct 2721 AGTCCTGTGATGTGAGCGATCATGTAGGTGAGGAGTGCGTAGCTGGCGATGTTGAAAGGC 2662 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 |||||||| |||||||| ||||| | |||||| ||||||||||| ||||| ||||| | | Sbjct 2661 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 2602 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| |||||||||| || |||||| || || || ||||||||| || |||| Sbjct 2601 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGCGCCATGAGGGGCAGGTCT 2548 >seq77726 Length=2370 Score = 118 bits (130), Expect = 9e-22 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 |||||||||||||||||||| | ||| ||||||| ||| |||||| ||||| || ||| Sbjct 1902 TTAAGCTCCCTGCTGAGGACAATGTTGATCCTGTTCTTCAAAGGTCTGTTCTTCTCAGGG 1961 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| ||||| || |||||||||| |||||||| ||||||||| || Sbjct 1962 ATGGAAAACCATGTTCTTCTACCCATGATCACCACATTCTGCTTGTCT 2009 >seq58637 Length=5382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 111860 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTATGGGAGAAAAGTGTCGCACGCAA 111919 ||| |||||| ||| ||||||| ||| |||| | | ||||| || ||||| ||| ||| Sbjct 4763 ACTTTGGCAGGAGATGATATCTGTCTGGACTGATTTCAGGGAGGAATGTGTCACACTCAA 4822 Query 111920 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCAT 111971 |||| || | || ||||| ||||| ||| | ||||||||||||||||| Sbjct 4823 ATTGTTTCAGGATTTGCGTGACGAACAGTCTCCTGGTCCCCGGGCTCTCCAT 4874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407797424413289