Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq137229 230 4e-55 seq51583 120 6e-22 seq101000 93.3 8e-14 >seq137229 Length=11157 Score = 230 bits (254), Expect = 4e-55 Identities = 835/1291 (65%), Gaps = 38/1291 (3%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCA 221425 || ||||||| ||||||||| ||| | ||||| | ||| | | ||| || Sbjct 1900 CCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCG 1959 Query 221426 GCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA- 221484 |||| ||| ||||||||||||||| |||| || || || || || | | || Sbjct 1960 GCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGG-GCTTTCAAA 2018 Query 221485 -GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||| | ||||| | ||| | || |||| || ||||| || || || || |||| Sbjct 2019 TGGGTA-ACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCC 2077 Query 221544 TGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGAT 221603 |||| | | ||||||| | ||||| ||||| ||||| ||||| || || || | | Sbjct 2078 TGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCT 2137 Query 221604 TGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCA--GCTTCTGGTGATTGAACAC 221661 |||| | |||| ||| ||||| ||||| | | || || || || Sbjct 2138 TGTTCAAGTTCTTGACGATTACTTT---------GGTCACGGATGCTAGTTTTTCAAAGT 2188 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 ||| | || || |||||| | | | | || || || | |||||| || Sbjct 2189 CAAACGTCTGC--TC----AGGGGTGACGTACATG--TTGAGCGCGATTGAGGCCAGATT 2240 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 || ||||| |||||||| | | |||| || | | || ||||| |||||||||||| | Sbjct 2241 GCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGA 2300 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||||||||| ||||| | | ||| || ||| || ||| ||||| ||||| ||||| Sbjct 2301 CTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCAT 2360 Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCT 221901 | || ||||| || ||| | | | | ||| | ||| | | | || | Sbjct 2361 GTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTT 2420 Query 221902 CACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTT 221961 |||| | |||||| || || ||| ||||| ||| |||||| | ||||||| Sbjct 2421 CACCACACGCTTGACCCTCCCGTC---CTTCTCATAGGAGGTGTAGAGCTTTTCAAACTC 2477 Query 221962 TTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 || || | ||||||||| || || ||| | ||||||||||||| ||||| | Sbjct 2478 CTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTG 2537 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 |||| | | || |||| |||||| ||||| |||||||||| | | || || ||||| Sbjct 2538 GTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGAAAAGGTCTCT 2597 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 || | |||||||||| || |||| ||| |||| |||| || ||||| | ||| Sbjct 2598 GGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAA 2657 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||||| ||||| || || | ||| | || ||||||| |||||| |||||||| ||||| Sbjct 2658 GTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCAC 2717 Query 222202 CATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTT 222261 | || | |||| | | | || | || || || |||||||| ||||| Sbjct 2718 ATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTT 2777 Query 222262 GGTGCCCTTAATGTACGCACCGCCG--GCCCTCAGGTTACTGGCAGACATGCCGATACCA 222319 |||||| |||||| || || ||| | || | | ||| | | || ||||| || Sbjct 2778 GGTGCCAGCAATGTA-GCTCC-CCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCT 2835 Query 222320 CCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAG 222379 || || || ||||| | |||||| ||| | ||||| |||||| || || | Sbjct 2836 CCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTG 2895 Query 222380 TCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTA 222439 || || || | | |||| || || |||| ||| | | ||| | ||||| Sbjct 2896 TCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTG 2955 Query 222440 AACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACG 222499 || ||||| ||| |||||| || || | | |||| ||| | || ||||| | | Sbjct 2956 AAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATG 3015 Query 222500 ACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGC 222559 ||| | | || | | | || ||| | | || |||| ||||| ||| ||| Sbjct 3016 ACTGCGTCAATATCATTTTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGC 3075 Query 222560 CTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAAC 222616 | || |||| || || | || | |||||| || |||||||||||||| Sbjct 3076 CGCTCGGCCACTTTGCCGTT-TATCT--TCAACAGGTAGGACCGCTCCAGAGTCTTGAAG 3132 Query 222617 CCAAAGTAGTTG-AGGTCAAAGTCTCTGCCG 222646 |||||| ||||| ||| ||| |||||| || Sbjct 3133 CCAAAGAAGTTGTAGGAGAAA-TCTCTGTCG 3162 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || |||||| || | |||| || || || || | Sbjct 1608 CATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTGACGAT 1667 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| ||||| ||||| | ||| | ||| ||| | ||||||||| Sbjct 1668 CTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCGATGGA 1727 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| ||||||||| Sbjct 1728 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACT 1787 Query 221245 GTT 221247 ||| Sbjct 1788 GTT 1790 >seq51583 Length=2687 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| ||||| |||||||| ||||| ||| ||||| ||||| Sbjct 977 GGAGAGCGCGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTTGCC 918 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||| ||| ||| || ||||| || ||| ||| |||||||||||| Sbjct 917 TCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCTGGCCTGACCTTCTCCAACGAGCTC 858 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 857 ATCAGCAGAGACGAGG 842 >seq101000 Length=9675 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | ||||| ||||| || |||||||||||||| ||| || || || || Sbjct 761 GGGGAGCGAATTGTAGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCT 820 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| ||||||||| ||| || ||||| || || || ||||||||||| Sbjct 821 GCCATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTG 880 Query 25993 ATCAGCAGGGACGAGG 26008 || |||||||| |||| Sbjct 881 ATTAGCAGGGATGAGG 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926932622041920