Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq120691 138 7e-27 seq87129 95.1 8e-14 >seq120691 Length=7194 Score = 138 bits (152), Expect = 7e-27 Identities = 365/553 (66%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| |||||| | || || || || |||||| || |||| || ||| Sbjct 5511 GAATATCTATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGCGGTTTTCCAGCATG 5452 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || || || || |||||||| || || || || || || || | | Sbjct 5451 GCAAAGTGGAGATCATCGCAAACGACCAAGGCAACAGGACCACGCCCAGCTACGTGGCCT 5392 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || || || |||||||| ||||| || | || | || | || || Sbjct 5391 TTACAGACACCGAGAGGCTCATTGGAGACGCTGCCAAGAACCAGGTGGCCTTGAACCCCA 5332 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || ||||| || || | | || || | || | | ||| || |||| Sbjct 5331 CCAACACAATCTTTGACGCCAAGCGGCTCATCGGGAGAAAGTGCAACGATGCCGTCGTCC 5272 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-- 474621 | ||||||||| | |||||||| |||||||| | || | || || || | | Sbjct 5271 AGTCTGATATGAAACTCTGGCCTTTCAAGGTGATCAGTGATAACGGAAAGCCCAAAGTCC 5212 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | | |||| | || || || || || | || || |||| || || ||||| Sbjct 5211 AGGTGGAGTACAAG--GGGGAGACCAAGGCCTTCTACCCAGAGGAAATCTCCTCCATGGT 5154 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | ||||||||| | | ||| ||| | || || ||||| || | |||||| Sbjct 5153 CCTGGTCAAAATGAAGGAGATCGCTGAGGCC-TACCTGGGACAGAGTGTGTCAAATGCAG 5095 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || |||||||| ||||| ||||| ||||| | ||||| || ||||| || || Sbjct 5094 TCATCACAGTTCCAGCTTATTTCAATGACTCTCAGAGGCAAGCCACCAAAGACGCCGGCG 5035 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || |||| || |||||| | || || || || || || ||||||||||| | || | Sbjct 5034 TGATCTCAGGACTGAATGTTCTCCGGATCATCAACGAGCCCACAGCAGCCGCCATCGCCT 4975 Query 474861 ATGGTCTTGATAA 474873 | || || || || Sbjct 4974 ACGGCCTGGACAA 4962 >seq87129 Length=7362 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| |||||||| || || || || || || || ||||| || || || |||||||||| Sbjct 4101 ATGCTGTAATTACGGTACCTGCCTACTTCAACGACTCTCAGCGCCAGGCCACTAAAGATG 4160 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | |||| | || || ||||| | ||||| || ||||||||||| || || || Sbjct 4161 CTGGGACAATTTCTGGCCTCAATGTCCTGCGTATCATCAATGAACCAACTGCTGCTGCCA 4220 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || |||||| | || || || Sbjct 4221 TCGCCTATGGTTTGGACAAAAA 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3261114718139564