Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq137229 197 2e-45 >seq137229 Length=11157 Score = 197 bits (218), Expect = 2e-45 Identities = 649/991 (65%), Gaps = 31/991 (3%) Strand=Plus/Minus Query 75705 TGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAA---TGGTCTCTTT 75761 ||||||| || ||||| ||||||||| | || |||| | ||| |||||||| Sbjct 2578 TGTGGATCCCTGACCTGTTCATGAAGAGAGTAGAGG---GCAACCAAGACTGGTCTCTGA 2522 Query 75762 TCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTC 75820 | ||||| || || || || || ||| || | ||| |||||||||||| ||| Sbjct 2521 TGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGAGTTTGAAAAGCTC 2463 Query 75821 TACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGC-CGATGTTTG 75879 ||||| ||||| |||| || || | ||| ||| || || | | | || || Sbjct 2462 TACACCTCCTATGAGAAGGACGGGAGGGTCAA-GCGTGTGGTGAAGGCTCAACAGGTGTG 2404 Query 75880 GAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGC 75939 | | || ||| | | || ||||| || ||||| || ||||| ||||| ||||| || || Sbjct 2403 GCATGCCATTATTGAGTCCCAGACAGAAACTGGTACGCCATACATGCTGTACAAAGACGC 2344 Query 75940 TTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCAC 75999 || ||| |||||| ||||| ||||| |||| || |||||| | || || ||||| Sbjct 2343 CTGCAACCGGAAGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCAC 2284 Query 76000 GGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 |||||| | || ||||| | || ||| || || |||||| |||| |||||||| Sbjct 2283 AGAAATTGTTGAATACACCAGCCACGACGAGGTAGCCGTCTGCAATCTGGCCTCAATCGC 2224 Query 76060 CCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACT-TCAT--GA 76116 || | ||| |||| ||| | || ||||| | ||||||||| ||| | Sbjct 2223 GCTCAACATGTACGTCACCCCTGAG---CAGACGTTTGACTTTGAAAAACTAGCATCCGT 2167 Query 76117 AATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT 76176 | || | || || ||| || | ||| ||||||| ||| || ||||| || Sbjct 2166 GACCAAAGTAATCGT---CAAGAACTTGAACAAGATCATTGAAGTAAACTTCTATCCTGT 2110 Query 76177 ---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGG 76233 ||| | | | ||||| || | ||| ||||| || || || | ||||| ||||| Sbjct 2109 GCCTGAAGCAGAG---AAGTCCAACAAGCGCCACAGGCCAATAGGAATTGGTGTACAAGG 2053 Query 76234 TCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGAT 76293 | | || |||| || || | || ||| ||||||| |||||| || | | Sbjct 2052 TTTGGCAGATGCCTTCATCCTCATGCGTTACCCATTTGAAAGCCCTGAAGCTCAGCTGCT 1993 Query 76294 GAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGC 76353 ||| || |||||||| ||||| || |||| | ||||||||||| || |||| Sbjct 1992 GAACATTCAGATCTTTGAGACCATTTACTACGCCGCTCTGGAGGCGAGCTGCATTCTGGC 1933 Query 76354 TGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC-CCAAGGG-GTGCTT 76411 | | | || |||| ||||| | || || ||||| |||| |||||| | || Sbjct 1932 CGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCC--CGTCAGCAAGGGCATCCTG 1875 Query 76412 CAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAACTACGACTGGGATGTTCTCAAGGA 76470 |||| || ||||||| || || || | | | | |||||| | | || ||||| Sbjct 1874 CAGTACGACATGTGGG-AGAAGACGCCCACCGACCGGTTGGACTGGAAACTGCTGAAGGA 1816 Query 76471 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 76530 ||| || | || | | |||||||| || |||| || ||||| |||||||| Sbjct 1815 GAAGATCGCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACAGCCTC 1756 Query 76531 CACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCT 76590 |||||| || ||| |||| || || || | | | ||||| ||||| | ||||||||| Sbjct 1755 CACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAACCCTACACCAGCAACATCTACAC 1696 Query 76591 GAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAA 76650 | || |||| | || |||||| || ||||| || || |||| ||| | | Sbjct 1695 CCGCAGGGTCCTCTCTGGAGAGTTTCAGATCGTCAATCCTCATCTGCTCAAAGACTTGAC 1636 Query 76651 GAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||| || || ||| | |||| |||||| Sbjct 1635 AGAGAGAGGACTGTGGAGCGAGGAGATGAAG 1605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595341464535840