Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 197 2e-45
>seq137229
Length=11157
Score = 197 bits (218), Expect = 2e-45
Identities = 649/991 (65%), Gaps = 31/991 (3%)
Strand=Plus/Minus
Query 75705 TGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAA---TGGTCTCTTT 75761
||||||| || ||||| ||||||||| | || |||| | ||| ||||||||
Sbjct 2578 TGTGGATCCCTGACCTGTTCATGAAGAGAGTAGAGG---GCAACCAAGACTGGTCTCTGA 2522
Query 75762 TCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTC 75820
| ||||| || || || || || ||| || | ||| |||||||||||| |||
Sbjct 2521 TGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGAGTTTGAAAAGCTC 2463
Query 75821 TACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGC-CGATGTTTG 75879
||||| ||||| |||| || || | ||| ||| || || | | | || ||
Sbjct 2462 TACACCTCCTATGAGAAGGACGGGAGGGTCAA-GCGTGTGGTGAAGGCTCAACAGGTGTG 2404
Query 75880 GAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGC 75939
| | || ||| | | || ||||| || ||||| || ||||| ||||| ||||| || ||
Sbjct 2403 GCATGCCATTATTGAGTCCCAGACAGAAACTGGTACGCCATACATGCTGTACAAAGACGC 2344
Query 75940 TTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCAC 75999
|| ||| |||||| ||||| ||||| |||| || |||||| | || || |||||
Sbjct 2343 CTGCAACCGGAAGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCAC 2284
Query 76000 GGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059
|||||| | || ||||| | || ||| || || |||||| |||| ||||||||
Sbjct 2283 AGAAATTGTTGAATACACCAGCCACGACGAGGTAGCCGTCTGCAATCTGGCCTCAATCGC 2224
Query 76060 CCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACT-TCAT--GA 76116
|| | ||| |||| ||| | || ||||| | ||||||||| ||| |
Sbjct 2223 GCTCAACATGTACGTCACCCCTGAG---CAGACGTTTGACTTTGAAAAACTAGCATCCGT 2167
Query 76117 AATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT 76176
| || | || || ||| || | ||| ||||||| ||| || ||||| ||
Sbjct 2166 GACCAAAGTAATCGT---CAAGAACTTGAACAAGATCATTGAAGTAAACTTCTATCCTGT 2110
Query 76177 ---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGG 76233
||| | | | ||||| || | ||| ||||| || || || | ||||| |||||
Sbjct 2109 GCCTGAAGCAGAG---AAGTCCAACAAGCGCCACAGGCCAATAGGAATTGGTGTACAAGG 2053
Query 76234 TCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGAT 76293
| | || |||| || || | || ||| ||||||| |||||| || | |
Sbjct 2052 TTTGGCAGATGCCTTCATCCTCATGCGTTACCCATTTGAAAGCCCTGAAGCTCAGCTGCT 1993
Query 76294 GAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGC 76353
||| || |||||||| ||||| || |||| | ||||||||||| || ||||
Sbjct 1992 GAACATTCAGATCTTTGAGACCATTTACTACGCCGCTCTGGAGGCGAGCTGCATTCTGGC 1933
Query 76354 TGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC-CCAAGGG-GTGCTT 76411
| | | || |||| ||||| | || || ||||| |||| |||||| | ||
Sbjct 1932 CGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCC--CGTCAGCAAGGGCATCCTG 1875
Query 76412 CAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAACTACGACTGGGATGTTCTCAAGGA 76470
|||| || ||||||| || || || | | | | |||||| | | || |||||
Sbjct 1874 CAGTACGACATGTGGG-AGAAGACGCCCACCGACCGGTTGGACTGGAAACTGCTGAAGGA 1816
Query 76471 ACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTC 76530
||| || | || | | |||||||| || |||| || ||||| ||||||||
Sbjct 1815 GAAGATCGCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACAGCCTC 1756
Query 76531 CACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCT 76590
|||||| || ||| |||| || || || | | | ||||| ||||| | |||||||||
Sbjct 1755 CACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAACCCTACACCAGCAACATCTACAC 1696
Query 76591 GAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAA 76650
| || |||| | || |||||| || ||||| || || |||| ||| | |
Sbjct 1695 CCGCAGGGTCCTCTCTGGAGAGTTTCAGATCGTCAATCCTCATCTGCTCAAAGACTTGAC 1636
Query 76651 GAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681
||| || || ||| | |||| ||||||
Sbjct 1635 AGAGAGAGGACTGTGGAGCGAGGAGATGAAG 1605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595341464535840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |