Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq137229 93.3 1e-13 >seq137229 Length=11157 Score = 93.3 bits (102), Expect = 1e-13 Identities = 428/673 (64%), Gaps = 7/673 (1%) Strand=Plus/Plus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCT 155534 || || || || || ||||| || || || || || | || | ||| ||||| ||| | Sbjct 2113 GGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACGGAT 2172 Query 155535 GCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGAC 155594 |||| ||| || ||||||| || | || | || |||| || | || || Sbjct 2173 GCTAGTTTTTCAAAGTCAAACGTCTGCTCAGGGGTGACGTACATGTTGAGCGCGATTGAG 2232 Query 155595 GCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGG 155654 |||||||| || || || ||| | || | | ||||||| ||||| || ||| ||| Sbjct 2233 GCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGG 2292 Query 155655 TTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTG 155714 || |||||||||||| | ||||| ||||| || | ||| || || || ||| Sbjct 2293 TTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTG 2352 Query 155715 TATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCA 155774 || || |||||||| || || || || |||| | || | ||| |||| | | Sbjct 2353 TACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGT 2412 Query 155775 CGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGG 155834 | || || | ||| || || ||| |||||| | || ||| || Sbjct 2413 TGAGCCTTCACCACACGCTTGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCA 2472 Query 155835 TAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAA 155894 | ||||| || | || || ||| || ||||||| | ||| || | ||| ||||| Sbjct 2473 AACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAG 2532 Query 155895 ATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGG 155954 || || || ||| | || ||| || | ||| ||| || | ||||||||| Sbjct 2533 TCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGAAAAGG 2592 Query 155955 TCCCTTGC-CTTTGACTCCT-CATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAA 156012 || || || || || ||||| | | ||||| |||||| ||||| | ||| || | Sbjct 2593 TCTCTGGCTCTCTG-CTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAACA 2650 Query 156013 TATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCT 156069 |||| || ||||| || ||||| || || || |||||| ||||||| Sbjct 2651 CATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCT 2710 Query 156070 GATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAG 156129 | || ||||| || || || || ||| | || | ||||| || | | || ||||| Sbjct 2711 GGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGT 2770 Query 156130 TGCCATTGGTTCC 156142 |||| ||||| || Sbjct 2771 TGCCGTTGGTGCC 2783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468711874907541