Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 93.3 1e-13
>seq137229
Length=11157
Score = 93.3 bits (102), Expect = 1e-13
Identities = 428/673 (64%), Gaps = 7/673 (1%)
Strand=Plus/Plus
Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCT 155534
|| || || || || ||||| || || || || || | || | ||| ||||| ||| |
Sbjct 2113 GGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACGGAT 2172
Query 155535 GCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGAC 155594
|||| ||| || ||||||| || | || | || |||| || | || ||
Sbjct 2173 GCTAGTTTTTCAAAGTCAAACGTCTGCTCAGGGGTGACGTACATGTTGAGCGCGATTGAG 2232
Query 155595 GCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGG 155654
|||||||| || || || ||| | || | | ||||||| ||||| || ||| |||
Sbjct 2233 GCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGG 2292
Query 155655 TTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTG 155714
|| |||||||||||| | ||||| ||||| || | ||| || || || |||
Sbjct 2293 TTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTG 2352
Query 155715 TATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCA 155774
|| || |||||||| || || || || |||| | || | ||| |||| | |
Sbjct 2353 TACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGT 2412
Query 155775 CGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGG 155834
| || || | ||| || || ||| |||||| | || ||| ||
Sbjct 2413 TGAGCCTTCACCACACGCTTGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCA 2472
Query 155835 TAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAA 155894
| ||||| || | || || ||| || ||||||| | ||| || | ||| |||||
Sbjct 2473 AACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAG 2532
Query 155895 ATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGG 155954
|| || || ||| | || ||| || | ||| ||| || | |||||||||
Sbjct 2533 TCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGAAAAGG 2592
Query 155955 TCCCTTGC-CTTTGACTCCT-CATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAA 156012
|| || || || || ||||| | | ||||| |||||| ||||| | ||| || |
Sbjct 2593 TCTCTGGCTCTCTG-CTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAACA 2650
Query 156013 TATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCT 156069
|||| || ||||| || ||||| || || || |||||| |||||||
Sbjct 2651 CATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCT 2710
Query 156070 GATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAG 156129
| || ||||| || || || || ||| | || | ||||| || | | || |||||
Sbjct 2711 GGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGT 2770
Query 156130 TGCCATTGGTTCC 156142
|||| ||||| ||
Sbjct 2771 TGCCGTTGGTGCC 2783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1468711874907541
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |