Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 118 1e-20
seq88271 105 8e-17
seq135781 95.1 1e-13
seq67842 86.0 8e-11
>seq137229
Length=11157
Score = 118 bits (130), Expect = 1e-20
Identities = 207/296 (70%), Gaps = 18/296 (6%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || || ||||| | ||| | || | |||||||| ||||| ||||||||
Sbjct 2709 CTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGA 2768
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAA 1630180
| |||||||||||| || | |||| || | | | ||| || |||| |
Sbjct 2769 GTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGA----CGGCCA 2824
Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240
|||||||| || || |||||||||||||| ||||| || || | |||||||||||||
Sbjct 2825 CACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTAGATGC 2884
Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCA-CGAGAA--AGCACGACGAGTTTTG--CGGGTG 1630295
| ||||| |||| | |||||| | | | |||| ||| ||| || | || | ||
Sbjct 2885 CTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGAC-AGCTGTGGCCTATTG 2943
Query 1630296 CGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACA 1630351
|| || |||||||||||||| || | || ||||||| ||| | |||||
Sbjct 2944 ----GTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACA 2995
>seq88271
Length=16613
Score = 105 bits (116), Expect = 8e-17
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
||||||||||||||||||| ||||||||||| |||| ||||| || ||| | |||||
Sbjct 15358 CGTCATCTCCTTTGACGGCTCCTACGTCAACTACCGTCACTTGGCTCTGCTCTGTGACAC 15417
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160
|||| ||||||||| || ||||| ||||||| |||||| |||||||
Sbjct 15418 CATGACCTGCCGCGGCCACCTGATGGCCATCACGCGTCACGGCATCAACCG 15468
>seq135781
Length=5285
Score = 95.1 bits (104), Expect = 1e-13
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||||||||||| || |||||||| |||| | ||| | |||||| | |||||||||
Sbjct 1825 GCCGCCAACTATCTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 1766
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295
||||| || ||||| | || ||||||||||| ||||| || ||||||||
Sbjct 1765 ATGATTAAAGGCAAAACCCCGGAGGAGATCCGGAAGACTTTCAACATCAA 1716
>seq67842
Length=11392
Score = 86.0 bits (94), Expect = 8e-11
Identities = 105/141 (74%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAGGACATGCCCTGGTCG 733169
|||||||| || || |||| | || | || || | || ||||||||||||||| ||
Sbjct 4425 CGCCACGGTCAGAAAGGCATCCTGAGTCGCCTGTGGCCCGCCGAGGACATGCCCT--TCA 4482
Query 733170 CCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229
| | | | |||| ||||||||||| || ||||||| |||| | |||| || ||||||
Sbjct 4483 CAGAGAG-CGGCATGGCGCCCGACATCCTGTTCAACCCCCACGGCTTCCCCTCTCGCATG 4541
Query 733230 ACCATGGGCAAGATGCTCGAG 733250
||||| || | | || |||||
Sbjct 4542 ACCATCGGGATGCTGATCGAG 4562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6093623721162681
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |