Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq137229 118 1e-20 seq88271 105 8e-17 seq135781 95.1 1e-13 seq67842 86.0 8e-11 >seq137229 Length=11157 Score = 118 bits (130), Expect = 1e-20 Identities = 207/296 (70%), Gaps = 18/296 (6%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || || ||||| | ||| | || | |||||||| ||||| |||||||| Sbjct 2709 CTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGA 2768 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAA 1630180 | |||||||||||| || | |||| || | | | ||| || |||| | Sbjct 2769 GTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGA----CGGCCA 2824 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 |||||||| || || |||||||||||||| ||||| || || | ||||||||||||| Sbjct 2825 CACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTAGATGC 2884 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCA-CGAGAA--AGCACGACGAGTTTTG--CGGGTG 1630295 | ||||| |||| | |||||| | | | |||| ||| ||| || | || | || Sbjct 2885 CTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGAC-AGCTGTGGCCTATTG 2943 Query 1630296 CGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACA 1630351 || || |||||||||||||| || | || ||||||| ||| | ||||| Sbjct 2944 ----GTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACA 2995 >seq88271 Length=16613 Score = 105 bits (116), Expect = 8e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 ||||||||||||||||||| ||||||||||| |||| ||||| || ||| | ||||| Sbjct 15358 CGTCATCTCCTTTGACGGCTCCTACGTCAACTACCGTCACTTGGCTCTGCTCTGTGACAC 15417 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 15418 CATGACCTGCCGCGGCCACCTGATGGCCATCACGCGTCACGGCATCAACCG 15468 >seq135781 Length=5285 Score = 95.1 bits (104), Expect = 1e-13 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| || |||||||| |||| | ||| | |||||| | ||||||||| Sbjct 1825 GCCGCCAACTATCTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 1766 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||| || ||||| | || ||||||||||| ||||| || |||||||| Sbjct 1765 ATGATTAAAGGCAAAACCCCGGAGGAGATCCGGAAGACTTTCAACATCAA 1716 >seq67842 Length=11392 Score = 86.0 bits (94), Expect = 8e-11 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACCGAGGACATGCCCTGGTCG 733169 |||||||| || || |||| | || | || || | || ||||||||||||||| || Sbjct 4425 CGCCACGGTCAGAAAGGCATCCTGAGTCGCCTGTGGCCCGCCGAGGACATGCCCT--TCA 4482 Query 733170 CCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATG 733229 | | | | |||| ||||||||||| || ||||||| |||| | |||| || |||||| Sbjct 4483 CAGAGAG-CGGCATGGCGCCCGACATCCTGTTCAACCCCCACGGCTTCCCCTCTCGCATG 4541 Query 733230 ACCATGGGCAAGATGCTCGAG 733250 ||||| || | | || ||||| Sbjct 4542 ACCATCGGGATGCTGATCGAG 4562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6093623721162681