Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq137229 174 1e-38 >seq137229 Length=11157 Score = 174 bits (192), Expect = 1e-38 Identities = 990/1565 (63%), Gaps = 83/1565 (5%) Strand=Plus/Plus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||||||| || | ||||| || | || |||||| || || | | || | || Sbjct 1637 TCAAGTCTTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCAGAGAGGACCCTGCGGG 1696 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | || || | || |||||||| ||||| ||||| || |||| Sbjct 1697 TGTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 1756 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCG 138656 || || ||||| |||| || ||| |||| | ||||| |||| || Sbjct 1757 AGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTG---CTTGGCGATCT 1813 Query 138657 T-TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| ||| ||||||| || ||| | || | || | |||||| ||||||| Sbjct 1814 TCTCCTTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTCTTCTCCCACATGTCGTACT 1873 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCG 138775 | | || ||| || ||||| ||||||||||| ||||| || | ||| | Sbjct 1874 GCAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGG 1933 Query 138776 CCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 ||| | ||||||||| || || | |||||||| || || ||||| || | Sbjct 1934 CCAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCA 1993 Query 138836 GCAATCGGGCCTCGGCGCTCTC------GTACGGCATGCGGAGCATCGTGAACGCGTCGG 138889 ||| | || || | ||| || ||| ||||| ||| |||| || || | Sbjct 1994 GCAGCTGAGCTTCAGGGCTTTCAAATGGGTAACGCATGAGGA------TGAAGGCATCTG 2047 Query 138890 CCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTT 138949 ||| ||||| || || | ||| | || | |||||| || ||| || | |||| Sbjct 2048 CCAAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAC---TTCTCTGCTT 2104 Query 138950 C---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAG 139006 | | |||||| ||||||| || ||||| ||||| || || |||| || || | Sbjct 2105 CAGGCACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGG 2164 Query 139007 T--CGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGAC 139064 | || |||| || | |||||| || | || | || | ||||| || Sbjct 2165 TCACGGATGC--TAGTTTTTCAAAGTCAAACGT------CTGCTCAGGGGTGACGT--AC 2214 Query 139065 AAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTA 139124 | |||||| || ||||| | ||||| || || || |||||| || | |||| Sbjct 2215 A----TGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTA 2270 Query 139125 TTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCT 139184 ||| |||||||| | || | || || ||||||| || || | ||| || || ||||| Sbjct 2271 TTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCT 2330 Query 139185 TTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTC 139244 || ||||| || || |||||||| ||||| || || || |||||||| || | ||| Sbjct 2331 CTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTC 2390 Query 139245 TATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTC 139304 |||||| | ||| ||| | | || || ||| | | | | | | | | Sbjct 2391 AATAATGGCATGCCACA----CCT-GTTGAGCCTTCAC-CAC---ACGCTTGACCCTCCC 2441 Query 139305 GTACTTTTC---------GTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAG 139352 || ||| || |||||| | || || || | | || | | |||| || Sbjct 2442 GTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTC---CAG 2498 Query 139353 ATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCAT 139412 || | |||| || |||||||| || ||||| | ||| ||| || | | |||| Sbjct 2499 CCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCAT 2558 Query 139413 GAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACC 139472 |||||| || || ||||||| || | | | || | || ||| || ||| || Sbjct 2559 GAACAGGTCAGGGATCCACATGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCC 2618 Query 139473 CATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGAT 139532 | |||| |||| | ||||| ||||| || ||| |||||| || || || || || Sbjct 2619 CGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACAT 2678 Query 139533 GGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAA 139589 ||| | || || | || || ||||| || || || | ||| | | ||| ||| | Sbjct 2679 GGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTA 2738 Query 139590 TACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACT--- 139646 || | || ||| || | || ||| | | | |||||||||| | ||| || Sbjct 2739 AACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCC 2798 Query 139647 -GTTGCGAGCTCGGACGTCATGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATT 139704 ||| | || || | || | || | ||||| || || | | ||||| || Sbjct 2799 CGTT----GATCTGATG-CAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATG 2853 Query 139705 AAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGAC 139763 | ||| || || | || || ||||| || ||| ||||||||||| | ||| | || Sbjct 2854 AGGGCGC-ATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAG 2912 Query 139764 CAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGC 139823 || ||||| || || || || || || || || || || |||||| || Sbjct 2913 CAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGC 2972 Query 139824 GTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCT 139883 ||| |||||| | | ||||| || | || || |||||| | ||||||| | Sbjct 2973 GTGGGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATT 3032 Query 139884 TCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCC 139943 | | ||||| || ||||| |||||||| ||||| || || ||| |||||||| ||| Sbjct 3033 TTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCC 3092 Query 139944 CTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTG 140001 | || || ||| || |||| ||| || |||||| |||||||| | | ||| | Sbjct 3093 GTTTATCTTCAACAGGTAGGACCG--CTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAG 3150 Query 140002 AAATC 140006 ||||| Sbjct 3151 AAATC 3155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448971412682040