Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq134877 123 4e-22 seq137229 111 2e-18 seq118207 105 1e-16 seq88271 102 1e-15 >seq134877 Length=8513 Score = 123 bits (136), Expect = 4e-22 Identities = 140/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| | ||||| || ||| ||| Sbjct 4987 TGTACTTGGTGACCGCCTTGGTCCCCTCGGACACGGCGTGCTTCGCCAGCTCCCCGGGCA 5046 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | |||||||||||| | ||| | | || ||| ||| ||| || || || | Sbjct 5047 GCAGCAGCCTCACGGCGGTCTGCACCTCCCTGCTGGTGATGGTGGAGCGTTTATT-GTAC 5105 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| ||||| ||| |||| | || | || ||| ||||| || |||||| Sbjct 5106 TGGGCCAGCCGGGACGCCTCTGTGGCGATCCTCTCAAACAGGTCATTGACGAAGGAGTTC 5165 Query 1485649 ATGAT 1485653 ||||| Sbjct 5166 ATGAT 5170 >seq137229 Length=11157 Score = 111 bits (122), Expect = 2e-18 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| || ||||| | ||| | || | |||||||| || || |||||||| Sbjct 2709 CTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGA 2768 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGC----GCACCTTGTGCGCGGCAA 2073655 | |||||||||||| || | |||| |||| | | ||| || |||| | Sbjct 2769 GTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGA----CGGCCA 2824 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 |||||||| || || | |||||||||||| ||||| | |||| || |||||||||| Sbjct 2825 CACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTAGATGC 2884 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 | ||||| |||| | |||||| | | || ||||| Sbjct 2885 CTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCA 2921 >seq118207 Length=4705 Score = 105 bits (116), Expect = 1e-16 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || || |||||| | ||||| |||||| ||| Sbjct 1460 TGTACTTGGTCACGGCCTTGGTGCCCTCAGACACAGCGTGCTTCGCCAGCTCGCCGGGCA 1519 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||| ||||| ||||| | || | ||| ||| ||||||||| | Sbjct 1520 GCAGCAGGCGGACGGCAGTCTGAATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 1579 Query 1485590 GCGCCAGGCGG 1485600 | ||||| ||| Sbjct 1580 GAGCCAGACGG 1590 >seq88271 Length=16613 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| ||||||||||||||| ||||||||||| |||| ||||| || ||| | ||||| Sbjct 15358 CGTCATCTCCTTTGACGGCTCCTACGTCAACTACCGTCACTTGGCTCTGCTCTGTGACAC 15417 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||| |||||| || ||||| ||||||| |||||| ||||||| Sbjct 15418 CATGACCTGCCGCGGCCACCTGATGGCCATCACGCGTCACGGCATCAACCG 15468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7898727254425227