Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq87129 113 3e-19 seq124617 102 6e-16 >seq87129 Length=7362 Score = 113 bits (124), Expect = 3e-19 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| || | |||||||||||||||||||| || || | || ||| Sbjct 4242 TTTTTGTCCAAACCATAGGCGATGGCAGCAGCAGTTGGTTCATTGATGATACGCAGGACA 4183 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| |||| | || |||||||||||||| || | || || ||||| || || Sbjct 4182 TTGAGGCCAGAAATTGTCCCAGCATCTTTAGTGGCCTGGCGCTGAGAGTCGTTGAAGTAG 4123 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| || ||||| || |||| |||| Sbjct 4122 GCAGGTACCGTAATTACAGCAT-TGTT 4097 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | || | |||| |||||||||||||||||||| Sbjct 3417 CAAAAACTGTGTTGGTGGGGTTCATGGCGACCTGATTCTTGGCTGCATCTCCAATCAGCC 3358 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 |||| ||||| || | ||||| || || || | || || || ||||| |||| Sbjct 3357 TCTCTGAATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 3298 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | ||||| ||||| | || || || | ||| | Sbjct 3297 TTATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCGA 3238 Query 282870 TACCAA 282875 |||||| Sbjct 3237 TACCAA 3232 >seq124617 Length=23549 Score = 102 bits (112), Expect = 6e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| ||||||||||||||| || || || || | | ||| Sbjct 9122 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCGTTGATGATACGAAGGACA 9181 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 9182 TTGAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 9241 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 |||||||| || | || |||| |||||| Sbjct 9242 GCAGGAACTGTCACTACTGCATTTGTTAC 9270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3732544669692618