Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq137229 208 7e-49 seq55784 116 4e-21 >seq137229 Length=11157 Score = 208 bits (230), Expect = 7e-49 Identities = 978/1529 (64%), Gaps = 42/1529 (3%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||| ||| | || ||||| |||| || | ||||||||| || | ||| || | || Sbjct 1637 TCAAGTCTTTGAGCAGATGAGGATTGACGATCTGAAACTCTCCAGAGAGGACCCTGCGGG 1696 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | ||||| | |||||||||||||||| ||||| ||||| | Sbjct 1697 TGTAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 1756 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 || |||||||| || | |||||| ||| | || ||| | || || || Sbjct 1757 AGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCT 1816 Query 148417 GCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| ||||||| | | ||| | || ||| | ||||||||||||||| Sbjct 1817 CCTTCAGCAGTTTCCAGTCCAACCGGTCGGTG--GGCGTCTTCTCCCACATGTCGTACTG 1874 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 ||| ||||| ||| |||| ||| ||||||| ||| || ||| || | || || Sbjct 1875 CAGGATGCCCTTGCTGACGGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGC 1934 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| |||||||||||| || ||| |||||||||| ||||| || || |||| || Sbjct 1935 CAGAATGCAGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAG 1994 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| || |||||| | || ||||| | | || || || || | || Sbjct 1995 CAGCTGAGCTTCAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATCTGCCAAACC 2054 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712 ||||| || | || || |||| ||| ||||||| | | ||| || || Sbjct 2055 TTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGA-CTTCTC-TGCT-TCAGGCAC 2111 Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGT-AATT 148769 |||||| ||| || ||||||||| ||||| || || | || || || | Sbjct 2112 AGGATAGAAGTTTACTTCAATGATCTTGTTCAAG-TTCTTGACGATTACTTTGGTCACGG 2170 Query 148770 CTGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATG-----CATCGGTTCACGGCGA 148824 ||| || |||||| || || | | || | || ||| ||| | |||| Sbjct 2171 ATGC-TAGTTTTTCAAAGTCAAACGTCTGCTCAGGGGTGACGTACAT--GTTGAGCGCGA 2227 Query 148825 TAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGC 148884 | ||||| |||||||| ||||| ||| || || | |||| || || || || | || Sbjct 2228 TTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGC 2287 Query 148885 ACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGT 148944 | || |||||| | ||||| ||||| |||| || |||||||| | |||||| |||| Sbjct 2288 AGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGT 2347 Query 148945 CCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCA 149004 | |||||||||||||| || |||||||| ||| | || | ||| | || Sbjct 2348 CTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACA 2407 Query 149005 GGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 | || || ||| ||| | | || |||| ||| || | || || ||| Sbjct 2408 CCTGTTGAGCCTTCACCACACGCTTGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCT 2467 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 || ||| |||| || |||| ||||| || |||||||||| || || ||||| || | Sbjct 2468 TTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAG 2527 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 |||| | || | | || | |||||| ||||| || || | ||| | |||| | Sbjct 2528 ACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGA 2587 Query 149185 TGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCT 149242 ||||| | || | ||| || || ||| |||| ||| | || | | Sbjct 2588 AAAGGTCTCTGGCTCTCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTC 2645 Query 149243 GAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CC 149299 || | || |||||| ||||| | ||||| |||| || || | |||| || Sbjct 2646 AAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCC 2705 Query 149300 GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACT 149359 |||||||| || | || || | ||||| | |||| | ||| || | | || | Sbjct 2706 ACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTT 2765 Query 149360 GGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGA 149418 || ||||||| || ||| |||| || || | || | | ||| | Sbjct 2766 GGAGTTGCCGTTGGTGCCAGC-AATGTAGCTCCCCGTTGATCTGATGCAGCTGACGGCCA 2824 Query 149419 CGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGT-CGCCGAGCGTCGAGTAGATG 149477 | |||||||| || | |||| |||||| ||||| | | | || || ||||||| Sbjct 2825 CACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAG-GTGTCGTAGATG 2883 Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537 || |||||||||||| ||||||| |||| ||||| | ||| || || | Sbjct 2884 CCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCTATTG 2943 Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCG 149597 || || || ||| | || || |||||| || || | |||| || || | Sbjct 2944 GTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTA 3003 Query 149598 TACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGC 149657 || | ||||| || ||| || |||| ||||||| || | | || ||||| ||| Sbjct 3004 TAAGTCTCGATGACTGCGTCAATATCATTTTCATGGATCCCAACAGACACTCGCATGAGC 3063 Query 149658 ATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAAGTAG--CCGTTTT 149712 || |||||||| ||||| |||||||| |||| || || | || |||| ||| | Sbjct 3064 ATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTT---ATCTTCAACAGGTAGGACCG--CT 3118 Query 149713 CTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 | || |||||| |||||||| | |||||| Sbjct 3119 CCAGAGTCTTGAAGCCAAAGAAGTTGTAG 3147 >seq55784 Length=9571 Score = 116 bits (128), Expect = 4e-21 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| |||| || | Sbjct 2616 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 2675 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||| |||||||| ||||||||||| |||||||| ||| || ||||| Sbjct 2676 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTC 2727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482425599727320