Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 152 5e-32
>seq137229
Length=11157
Score = 152 bits (168), Expect = 5e-32
Identities = 970/1540 (63%), Gaps = 44/1540 (3%)
Strand=Plus/Plus
Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950
||||||| | |||||||| || | || || | | | || | ||||| ||| | |
Sbjct 1658 GATTGACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 1717
Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010
| || | ||||| || ||||| | || ||||| |||| || || ||||| ||||
Sbjct 1718 GTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCA 1777
Query 147011 CCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCC 147069
|| || || | || |||| | ||| || ||||||| ||||| |||||||
Sbjct 1778 GCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTT-CCAGTCC 1836
Query 147070 CACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGG 147127
|| ||| | ||||||| | ||||||||||||||| || | || ||| |||
Sbjct 1837 AACCGGTCG--GTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGG 1894
Query 147128 GACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCG 147186
|| ||| || |||| |||| ||| || | ||| ||| ||||| |||||
Sbjct 1895 GAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGAATGCAGCTCGCCTCC 1953
Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246
|| || | ||||| ||||| || ||| || |||| || | ||||| |||
Sbjct 1954 AGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTT 2013
Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306
|| | || ||||| || | |||||||| |||||||| || | ||| | || ||
Sbjct 2014 TCAAATGGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATT 2073
Query 147307 GGTCGATGCTTTTCG-TTGCTGCGCTTCGC-GCTC--GCTATGGGATAGTGGTTGCGATC 147362
|| | || || ||| || |||| | ||| | | |||||| ||| ||
Sbjct 2074 GGCCTGTGG----CGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTC 2129
Query 147363 AATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422
||| |||||||| | ||| || | ||||| || | | | ||||| || || ||
Sbjct 2130 AATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTC 2189
Query 147423 ATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGA 147481
| | ||| || | |||||| || ||| | ||||| || |||||||||||||
Sbjct 2190 AAACGTCTGCTCAGGGGTGACGTAC--AT--GTTGAGCGCGATTGAGGCCAGATTGCAGA 2245
Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541
|||| ||| ||| | | |||| | || ||||| | ||| ||||||||| | || |
Sbjct 2246 CGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGA 2305
Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601
|| |||| ||| || || ||||| ||||| ||||| ||||||||| | |||||||| |
Sbjct 2306 TGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATG 2365
Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGAT--------AAACCTATGCAGGTCCTGCGC 147653
| || || || || | |||| || | |||| | || ||| | |
Sbjct 2366 GCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAG--CCTTCAC 2423
Query 147654 TCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTC 147713
||| |||| || | || || || || || ||| | | ||||||||
Sbjct 2424 ---CACACGCT--TGA-CCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTC 2477
Query 147714 GTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTC 147773
|| || |||| ||| | || ||||| |||| | ||||||||||| ||||| |
Sbjct 2478 CTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTG 2537
Query 147774 GTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC- 147832
|| | | || | ||| ||||| || || | ||||| |||| | ||| || |
Sbjct 2538 GTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGAAAAGGTCTCT 2597
Query 147833 -GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCG 147891
|| || ||| ||||| ||| |||| |||| | || | | | | | ||
Sbjct 2598 GGCTCTCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCA 2655
Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCG 147948
||||||||| || | ||| | ||| | || || | | || || ||||||||
Sbjct 2656 AAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCC 2715
Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008
|||| || || | ||||| | || | || |||||| | || ||| | | |||||
Sbjct 2716 ACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCG 2775
Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068
|||||| | || | ||| || | || | | ||| || || |||||
Sbjct 2776 TTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCT 2835
Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128
|| | |||| || ||| ||||| | ||| || ||||||||| |||||||||
Sbjct 2836 CCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTG 2895
Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188
|||| ||| | | | ||||| || || ||| || || | ||||| || |
Sbjct 2896 TCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTG 2955
Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATA 148248
|| || || ||| ||||| || ||| | || | || || | ||| ||||| ||
Sbjct 2956 AAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATG 3015
Query 148249 GCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGT 148308
| | || || || | | || || || | | || ||||||||||||||||| ||
Sbjct 3016 ACTGCGTCAATATCATTTTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGC 3075
Query 148309 CGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCA 148368
|| ||||| |||| ||| ||||| | || || || || || ||| | |||
Sbjct 3076 CGCTCGGCCACTTTGCCGTTTATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCA 3135
Query 148369 AAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
||| | ||||| |||||| ||| || |||||||
Sbjct 3136 AAGAAGTTGTAGGAGAAATCTCTGTCGAAAATTATGGCCG 3175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475630018395480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |