Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq137229 152 5e-32 >seq137229 Length=11157 Score = 152 bits (168), Expect = 5e-32 Identities = 970/1540 (63%), Gaps = 44/1540 (3%) Strand=Plus/Plus Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950 ||||||| | |||||||| || | || || | | | || | ||||| ||| | | Sbjct 1658 GATTGACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 1717 Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 | || | ||||| || ||||| | || ||||| |||| || || ||||| |||| Sbjct 1718 GTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCA 1777 Query 147011 CCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCC 147069 || || || | || |||| | ||| || ||||||| ||||| ||||||| Sbjct 1778 GCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTT-CCAGTCC 1836 Query 147070 CACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGG 147127 || ||| | ||||||| | ||||||||||||||| || | || ||| ||| Sbjct 1837 AACCGGTCG--GTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGG 1894 Query 147128 GACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCG 147186 || ||| || |||| |||| ||| || | ||| ||| ||||| ||||| Sbjct 1895 GAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGAATGCAGCTCGCCTCC 1953 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 || || | ||||| ||||| || ||| || |||| || | ||||| ||| Sbjct 1954 AGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTT 2013 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 || | || ||||| || | |||||||| |||||||| || | ||| | || || Sbjct 2014 TCAAATGGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATT 2073 Query 147307 GGTCGATGCTTTTCG-TTGCTGCGCTTCGC-GCTC--GCTATGGGATAGTGGTTGCGATC 147362 || | || || ||| || |||| | ||| | | |||||| ||| || Sbjct 2074 GGCCTGTGG----CGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTC 2129 Query 147363 AATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATC 147422 ||| |||||||| | ||| || | ||||| || | | | ||||| || || || Sbjct 2130 AATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTC 2189 Query 147423 ATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGA 147481 | | ||| || | |||||| || ||| | ||||| || ||||||||||||| Sbjct 2190 AAACGTCTGCTCAGGGGTGACGTAC--AT--GTTGAGCGCGATTGAGGCCAGATTGCAGA 2245 Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 |||| ||| ||| | | |||| | || ||||| | ||| ||||||||| | || | Sbjct 2246 CGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGA 2305 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || |||| ||| || || ||||| ||||| ||||| ||||||||| | |||||||| | Sbjct 2306 TGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATG 2365 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGAT--------AAACCTATGCAGGTCCTGCGC 147653 | || || || || | |||| || | |||| | || ||| | | Sbjct 2366 GCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAG--CCTTCAC 2423 Query 147654 TCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTC 147713 ||| |||| || | || || || || || ||| | | |||||||| Sbjct 2424 ---CACACGCT--TGA-CCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTC 2477 Query 147714 GTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTC 147773 || || |||| ||| | || ||||| |||| | ||||||||||| ||||| | Sbjct 2478 CTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTG 2537 Query 147774 GTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC- 147832 || | | || | ||| ||||| || || | ||||| |||| | ||| || | Sbjct 2538 GTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGAAAAGGTCTCT 2597 Query 147833 -GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCG 147891 || || ||| ||||| ||| |||| |||| | || | | | | | || Sbjct 2598 GGCTCTCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCA 2655 Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCG 147948 ||||||||| || | ||| | ||| | || || | | || || |||||||| Sbjct 2656 AAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCC 2715 Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008 |||| || || | ||||| | || | || |||||| | || ||| | | ||||| Sbjct 2716 ACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCG 2775 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| | || | ||| || | || | | ||| || || ||||| Sbjct 2776 TTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACGGCCACACCGATGCCT 2835 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 || | |||| || ||| ||||| | ||| || ||||||||| ||||||||| Sbjct 2836 CCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTG 2895 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188 |||| ||| | | | ||||| || || ||| || || | ||||| || | Sbjct 2896 TCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTG 2955 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATA 148248 || || || ||| ||||| || ||| | || | || || | ||| ||||| || Sbjct 2956 AAGAGCGTAGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATG 3015 Query 148249 GCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGT 148308 | | || || || | | || || || | | || ||||||||||||||||| || Sbjct 3016 ACTGCGTCAATATCATTTTCATGGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGC 3075 Query 148309 CGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCA 148368 || ||||| |||| ||| ||||| | || || || || || ||| | ||| Sbjct 3076 CGCTCGGCCACTTTGCCGTTTATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCA 3135 Query 148369 AAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||| | ||||| |||||| ||| || ||||||| Sbjct 3136 AAGAAGTTGTAGGAGAAATCTCTGTCGAAAATTATGGCCG 3175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475630018395480