Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq137229 122 1e-21 seq134877 98.7 1e-14 seq88271 93.3 6e-13 seq55784 89.7 7e-12 seq51583 86.0 9e-11 >seq137229 Length=11157 Score = 122 bits (134), Expect = 1e-21 Identities = 202/291 (69%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| || ||| ||||||| || | || |||||||| || || || || | | Sbjct 2995 TGTCGGAGAAGTGGTTCACCCACGCCTCTCCTACGCTCTTCAACGCAGGAACCAATAGGC 2936 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| || | | |||||| | ||| ||||| |||||||| | Sbjct 2935 CACAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTACG 2876 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 |||| | ||||| ||||| |||||||||||| | || || ||||||||| | |||| Sbjct 2875 ACACCTTGAAGCAATGCGCCCTCATCTCCAAGTCAGCTGGAGGCATCGGTGTGGCCG--- 2819 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | | |||| |||| | || |||||||||||| | |||||||| Sbjct 2818 -TCAGCTGCATCAGATCAACGGGGAGCTACATTGCTGGCACCAACGGCAACTCCAACGGG 2760 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || |||||||| | |||| ||| | ||||| || || || |||||| Sbjct 2759 CTCGTCCCCATGCTGAGAGTTTACAACAATACGGCACGTTATGTGGACCAG 2709 >seq134877 Length=8513 Score = 98.7 bits (108), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || ||||| ||| || | || | |||| ||| ||||| Sbjct 5178 CCATGAGCATCATGAACTCCTTCGTCAATGACCTGTTTGAGAGGATCGCCACAGAGGCGT 5119 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| | | ||| || ||| ||| ||| || | ||| | |||||||||| Sbjct 5118 CCCGGCTGGCCCAGTACAATAAACGCTCCACCATCACCAGCAGGGAGGTGCAGACCGCCG 5059 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| | ||| ||| || ||||| | ||||||||| |||||||| |||| Sbjct 5058 TGAGGCTGCTGCTGCCCGGGGAGCTGGCGAAGCACGCCGTGTCCGAGGGGACCA 5005 >seq88271 Length=16613 Score = 93.3 bits (102), Expect = 6e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGTG 1813165 ||||| | |||||| ||||||| ||||| || ||||||||| ||||||||| | Sbjct 15468 CGGTTGATGCCGTGACGCGTGATGGCCATCAGGTGGCCGCGGCAGGTCATGGTGTCACAG 15409 Query 1813166 GCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 ||| || ||||| |||| |||||| |||| ||||||||||||||| ||| Sbjct 15408 AGCAGAGCCAAGTGACGGTAGTTGACGTAGGAGCCGTCAAAGGAGATGACG 15358 >seq55784 Length=9571 Score = 89.7 bits (98), Expect = 7e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 262124 GAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAG 262183 || ||||| || || |||||| |||||||||||||| |||| || |||||||||||| Sbjct 2727 GAAACCGGTACACCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 2668 Query 262184 AACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGATCGT 262227 || |||||||||| | | ||| |||||||| |||||||| Sbjct 2667 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAGATCGT 2624 >seq51583 Length=2687 Score = 86.0 bits (94), Expect = 9e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038 ||||| || | || |||||||||||||||||||| || |||||||||||||| | ||| Sbjct 1347 GAGGCCCGGTGTTTCTACGGGTTCCAGATCGCCATGGAGAACATCCACTCTGAGATGTAC 1288 Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||| |||||||| ||||||| || Sbjct 1287 AGCCTGCTCATCAACACCTACATCAAGGAGCC 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7161926257444266