Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq137229 131 2e-25 seq55784 89.7 5e-13 >seq137229 Length=11157 Score = 131 bits (144), Expect = 2e-25 Identities = 889/1422 (63%), Gaps = 16/1422 (1%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| ||||||| || |||||| || || || || || |||||||| |||| || Sbjct 3111 CTACCTGTTGAAGATAAACGGCAAAGTGGCCGAGCGGCCGCAGCACATGCTCATGCGAGT 3052 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | | || || || || | | || |||||||| | | | || || || | || |||| Sbjct 3051 GTCTGTTGGGATCCATGAAAATGATATTGACGCAGTCATCGAGACTTATAACCTGCTGTC 2992 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || || | || ||| || || || ||| || Sbjct 2991 GGAGAAGTGGTTCACCCACGCCTCTCCTACGCTCTTCAACGCAGGAACCAATAGGCCACA 2932 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || ||||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 2931 GCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTACGACAC 2872 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 || | |||||| || ||||| | | || || || ||| || ||| | | Sbjct 2871 CTTGAAGCAATGCGCCCTCATCTCCAAGTCAGCTGGAGGCATCGGTGTGGCCGTCAGCTG 2812 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | | | | || ||| ||| | ||||||||| || ||| ||| | | || Sbjct 2811 CATCAGATCAACGGGGAGCTACATTGCTGGCACCAACGGCAACTCCAACGGGCTCGTCCC 2752 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGG-GGGAA--AGCGCAA 7940 |||| || | || | ||| || ||| || |||| |||||||| ||||| || | Sbjct 2751 CATGCTGAGAGTTTACAACAATACGGCACGTTATGTGGACCAGGGTGGGAACAAGAGACC 2692 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 || ||| ||||| || | ||||| |||||| || | | | | || | || Sbjct 2691 CGGGGCCTTCGCCATGTACCTAGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCT 2632 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | |||| ||| || || ||| | ||| | || || |||| ||| ||||| Sbjct 2631 GAAGAAGAACACGGGAAAGGAGGAGCAG-AGAGCCAGAGACCTTTTCTACGGCATGTGGA 2573 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | || || ||||| |||| | | || | | || | | ||||| || ||||| ||| Sbjct 2572 TCCCTGACCTGTTCATGAAGAGAGTAGAGGGCAACCAAGACTGGTCTCTGATGTGTCCCA 2513 Query 8120 ATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAAT 8179 | ||||| | | | | || | |||||| | | |||| | Sbjct 2512 ACGAGTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAAAAGCTCTACACCTCCT 2453 Query 8180 ACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTA 8239 | || | ||||| | | ||| ||||| || | | || | ||||||| Sbjct 2452 ATGAGAAGGACGGGAGGGTCAAGCGTGTGGTGAAGGCTCAACAGGTGTGGCATGCCATTA 2393 Query 8240 TCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCA 8299 | || | || | ||||| |||| ||| |||||||||||||||||||| |||||| | Sbjct 2392 TTGAGTCCCAGACAGAAACTGGTACGCCATACATGCTGTACAAAGACGCCTGCAACCGGA 2333 Query 8300 AAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTAC 8359 | ||||| || || |||||||||| | |||||| || ||| | |||||||| Sbjct 2332 AGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGAAATTGTTG 2273 Query 8360 AGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGT 8419 | |||| | | |||||| || ||||| |||||||| || || | | ||| || Sbjct 2272 AATACACCAGCCACGACGAGGTAGCCGTCTGCAATCTGGCCTCAATCGCGCTCAACATGT 2213 Query 8420 TCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTG---CAAG 8476 || | | | | || || || ||||||||| || | | ||||| ||| Sbjct 2212 ACG-TCACCCCTGAGCAGACGTTT--GACTTTGAAAAACT---AGCATCCGTGACCAAAG 2159 Query 8477 TGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGC 8536 | | || || || | |||||||| || || || ||||| || ||||| Sbjct 2158 TAATCGTCAAGAACTTGAACAAGATCATTGAAGTAAACTTCTATCCTGTGCCTGAAGC-A 2100 Query 8537 GCGTA-TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCG 8595 | | | || |||| ||||||||| || | || | || || |||||| |||| || || Sbjct 2099 GAGAAGTCCAACAAGCGCCACAGGCCAATAGGAATTGGTGTACAAGGTTTGGCAGATGCC 2040 Query 8596 TTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATA 8655 || | | |||| ||| | ||||||| ||||| | |||| ||||| | || Sbjct 2039 TTCATCCTCATGCGTTACCCATTTGAAAGCCCTGAAGCTCAGCTGCTGAACATTCAGATC 1980 Query 8656 GCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGC 8715 || || | || |||| ||| | || || ||||| || ||| || | ||| Sbjct 1979 TTTGAGACCATTTACTACGCCGCTCTGGAGGCGAGCTGCATTCTGGCCGCTGAGCTCGGC 1920 Query 8716 ACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGG 8775 | ||||| |||||| ||| || | |||| || || |||| |||||||||||| Sbjct 1919 CCCTACGAGACGTACGAAGGCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTGG 1860 Query 8776 AATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTC 8835 | ||||||||| || | | |||| |||| || || || | | Sbjct 1859 GAGAAGACGCCCACCGACCGGTTGGACTGGAAACTGCTGAAGGAGAAGATCGCCAAGCAC 1800 Query 8836 GGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATG 8895 || || | || ||| || |||| |||||||| ||| | || || || || || Sbjct 1799 GGCGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACAGCCTCCACCGCCCAGATCCTG 1740 Query 8896 GGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || |||||||| ||| | || || | ||||| |||| | ||| Sbjct 1739 GGCAACAACGAGTCCATCGAACCCTACACCAGCAACATCTAC 1698 >seq55784 Length=9571 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| || || | ||| | |||||||||| || |||||||| ||||| ||||| || Sbjct 2749 CGCCATCATTGAGTCTCAGACAGAAACCGGTACACCATACATGCTCTACAAGGACGCCTG 2690 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || || |||||||||| | ||||||||||||| | || Sbjct 2689 CAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGA 2630 Query 8352 AATTGTACAGTACA 8365 || ||| |||||| Sbjct 2629 GATCGTAGAGTACA 2616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504357955266360