Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq137696 118 2e-21 seq90121 93.3 6e-14 >seq137696 Length=6824 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 214082 CGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATT 214141 || ||||| |||| ||||| |||||| || || |||||| | ||| ||||||||| Sbjct 2818 CGCTTCGCTGTGGGCCACGAGGCGTTTGGCCTTGTCCCCGGTCTGATGATGTACGCCACC 2877 Query 214142 ATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGG 214201 |||||||| ||||||||||| | || || || ||| |||| | | |||||||| ||| Sbjct 2878 ATCTGGCTACGAGAGCACAACCGAGTGTGTGATGTGTTGAAGGAGGTCCACCCGGACTGG 2937 Query 214202 AACGACGAACAGCTGTTCCAGATCACTCGTTTAAT 214236 |||||||| ||| ||||||| ||| || ||||| Sbjct 2938 GACGACGAAAGGCTCTTCCAGACCACACGGTTAAT 2972 >seq90121 Length=4062 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 214094 GGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGA 214153 ||| | ||| |||| || || |||| || ||| ||||||||| | |||||||| Sbjct 1126 GGTCAGGAGGTGTTCGGCATCCTGCCGGGCCTCACCTTGTACGCCACCCTATGGCTGAGG 1185 Query 214154 GAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAG 214213 ||||||||||| || |||||||| ||||| ||| || ||| ||| ||||||| ||| Sbjct 1186 GAGCACAACAGAGTCTGCGACGTCCTGAAGGCAGAACATCCGACCTGGGACGACGAGCAG 1245 Query 214214 CTGTTCCAGATCAC 214227 || ||||||| ||| Sbjct 1246 CTCTTCCAGACCAC 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721851685420320