Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq137229 430 2e-115 seq101000 114 2e-20 seq55784 102 1e-16 >seq137229 Length=11157 Score = 430 bits (476), Expect = 2e-115 Identities = 1271/1948 (65%), Gaps = 15/1948 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| | |||||| || || || | || ||||| ||||| Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || ||||| | || || || ||||| || || ||||| || ||||| Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | ||| || || | || || | ||| || || || || ||||||| ||| | | Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || || || || || || | || || Sbjct 1843 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCT 1902 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | || || || || ||||| | || || Sbjct 1903 TCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCG 1962 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || ||||| || || || |||| | || || || ||||| | || || ||||| Sbjct 1963 TAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGGG 2022 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || || || ||||||||||| || || || ||||| || || || || || Sbjct 2023 TAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGTGG 2082 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || | || ||||| || | |||||| | || | || || || || || Sbjct 2083 CGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTGTTC 2142 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----C 69248 | || ||| | |||||| |||| |||||| ||| ||||| |||| | Sbjct 2143 AAGTTCTTGACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTCAAA-CGTCTGCTC 2201 Query 69249 ATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 | | || |||| || || || | || || ||||| || || |||||||| | Sbjct 2202 AGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTG 2261 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | | |||| | || ||||| || || || || | ||||| || |||||||| || Sbjct 2262 GCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTG 2321 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 || || ||||| ||| |||||||| ||||| || || | || ||||||||||| | Sbjct 2322 GTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGT 2381 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488 ||| || || ||||| | | ||| || ||| || | || |||| || || Sbjct 2382 CTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTG--ACCCTC 2439 Query 69489 C--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 | || || ||||| || || ||| ||| || || || ||||| || |||| Sbjct 2440 CCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGC 2499 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 || || || || || |||||||||| ||||| | | | ||| |||| ||||| Sbjct 2500 CCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATG 2559 Query 69607 AATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || || || || ||||| | | || ||| || ||||||| ||| | || || ||||| Sbjct 2560 AACAGGTCAGGGATCCACATGCCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCC 2618 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 || || || || || || || || || | | |||| | ||||| || ||||| || || Sbjct 2619 CGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACAT 2678 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | | || |||| || || || ||||| || | || | || || || || || Sbjct 2679 GGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTA 2738 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 ||||||||||| || | | || || || || || || || |||| ||| || || || Sbjct 2739 AACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCC 2798 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 ||| | || || | | | ||| || ||||| || || ||||| || || Sbjct 2799 CGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGC 2858 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965 || | ||||| ||||| || || || || ||||| || ||| ||||| || | || Sbjct 2859 GCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAA 2918 Query 69966 ACAGCTAGACATTTGATGATGTATAG-TTCCCGCATTAAATAATGTAGGAGATGCGTGAG 70024 ||||| |||| || || ||| | |||| || || || | |||||||| ||||| | Sbjct 2919 GCAGCTGGACAGCTG-TGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGG 2977 Query 70025 TGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGAT 70084 ||||||| || || || ||||| || || || || || ||| || ||||| | || Sbjct 2978 TGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCAT 3037 Query 70085 GAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTA 70144 | || || | | || ||||| | ||| ||||| || || || || ||| |||| Sbjct 3038 GGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTTA 3097 Query 70145 TTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTC 70204 | ||||||||||| || |||||||| || || ||||| ||||||| || || |||| Sbjct 3098 TCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTC 3157 Query 70205 TTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCA-TAACA 70263 | ||| |||| || | || || || || || | | ||| || | | | | Sbjct 3158 TGTCGAAAATTATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACGATGTTGAGTGTCT 3217 Query 70264 GTAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCT 70323 | | ||||| || ||||| | | | |||| || || | |||||| | | || Sbjct 3218 GCTTG-GAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTACAGGTCC 3276 Query 70324 TCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTG 70383 ||||| || ||||| || | || || || || ||||| | || || | || || | Sbjct 3277 TCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGCGATCCGC 3336 Query 70384 GCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCT 70443 || || || || || ||||| || |||| || || ||| || | || || ||||| Sbjct 3337 GCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTCTGCAGCC 3396 Query 70444 AACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCT 70503 | ||| || | || | || || || || | || | || || || || ||||| | Sbjct 3397 AGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTTCATCGTA 3456 Query 70504 ATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGAT 70563 || | | ||||| | ||| || | ||| || || || || | || |||||||| Sbjct 3457 ATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGATACGAGAG 3516 Query 70564 GTAATTTTATCAAACATAACATTCTCCT 70591 || |||||||| ||||| ||| ||||| Sbjct 3517 GTGATTTTATCGAACATGACACGCTCCT 3544 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || ||||||||| || | || || || || || || | Sbjct 1260 TCCAGCCATAGAAGTGCATGCTGGTTAGTTTGCCGTAGTTCGGCTCTGCGATGTGGATGT 1319 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||| || || || |||||||| | || | || || ||||| || || || ||| Sbjct 1320 TCAGCGACTGGCTCTGGTCGATGAAGGTGCCGCGGTCGGCGGCCATCTTGATTATGGTCT 1379 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||||| || ||| | | ||| || | ||||||||||| Sbjct 1380 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGGAA 1430 >seq101000 Length=9675 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||||| || | || || |||||||||| || | ||| | Sbjct 896 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAATCCTCTCTTCT 837 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 |||||||| | |||||||| || || ||||| ||||||||||| || ||||||||||| | Sbjct 836 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCAAAAG 777 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| || ||| || Sbjct 776 CTACAATTCGCTCCCC 761 >seq55784 Length=9571 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || ||||||| || |||||||| ||||| || ||||| || Sbjct 2627 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 2686 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || | || ||||| ||||| ||||||| || || || Sbjct 2687 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTCTGTCTGAGACTCAATGAT 2745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685494686612520