Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 430 2e-115
seq101000 114 2e-20
seq55784 102 1e-16
>seq137229
Length=11157
Score = 430 bits (476), Expect = 2e-115
Identities = 1271/1948 (65%), Gaps = 15/1948 (1%)
Strand=Plus/Plus
Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712
||||| ||||| || |||||| | |||||| || || || | || ||||| |||||
Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662
Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772
|| || ||||| || ||||| | || || || ||||| || || ||||| || |||||
Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722
Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832
| || || || || ||||| || || || || || || || ||||| || |||| ||
Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782
Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892
| ||| || || | || || | ||| || || || || ||||||| ||| | |
Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842
Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952
|| | || | ||| | ||||| || || || || || || | || ||
Sbjct 1843 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCT 1902
Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012
| || || || || || || || | || || || || ||||| | || ||
Sbjct 1903 TCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCG 1962
Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072
|| ||||| || || || |||| | || || || ||||| | || || |||||
Sbjct 1963 TAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGGG 2022
Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132
||| | | || || || ||||||||||| || || || ||||| || || || || ||
Sbjct 2023 TAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGTGG 2082
Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192
| ||| || || | || ||||| || | |||||| | || | || || || || ||
Sbjct 2083 CGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTGTTC 2142
Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC----C 69248
| || ||| | |||||| |||| |||||| ||| ||||| |||| |
Sbjct 2143 AAGTTCTTGACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTCAAA-CGTCTGCTC 2201
Query 69249 ATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308
| | || |||| || || || | || || ||||| || || |||||||| |
Sbjct 2202 AGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTG 2261
Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368
| | |||| | || ||||| || || || || | ||||| || |||||||| ||
Sbjct 2262 GCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTG 2321
Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428
|| || ||||| ||| |||||||| ||||| || || | || ||||||||||| |
Sbjct 2322 GTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGT 2381
Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488
||| || || ||||| | | ||| || ||| || | || |||| || ||
Sbjct 2382 CTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTG--ACCCTC 2439
Query 69489 C--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546
| || || ||||| || || ||| ||| || || || ||||| || ||||
Sbjct 2440 CCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGC 2499
Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606
|| || || || || |||||||||| ||||| | | | ||| |||| |||||
Sbjct 2500 CCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATG 2559
Query 69607 AATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665
|| || || || ||||| | | || ||| || ||||||| ||| | || || |||||
Sbjct 2560 AACAGGTCAGGGATCCACATGCCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCC 2618
Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725
|| || || || || || || || || | | |||| | ||||| || ||||| || ||
Sbjct 2619 CGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACAT 2678
Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785
|| | | | || |||| || || || ||||| || | || | || || || || ||
Sbjct 2679 GGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTA 2738
Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845
||||||||||| || | | || || || || || || || |||| ||| || || ||
Sbjct 2739 AACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCC 2798
Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905
||| | || || | | | ||| || ||||| || || ||||| || ||
Sbjct 2799 CGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGC 2858
Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965
|| | ||||| ||||| || || || || ||||| || ||| ||||| || | ||
Sbjct 2859 GCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAA 2918
Query 69966 ACAGCTAGACATTTGATGATGTATAG-TTCCCGCATTAAATAATGTAGGAGATGCGTGAG 70024
||||| |||| || || ||| | |||| || || || | |||||||| ||||| |
Sbjct 2919 GCAGCTGGACAGCTG-TGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGG 2977
Query 70025 TGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGAT 70084
||||||| || || || ||||| || || || || || ||| || ||||| | ||
Sbjct 2978 TGAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCAT 3037
Query 70085 GAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTA 70144
| || || | | || ||||| | ||| ||||| || || || || ||| ||||
Sbjct 3038 GGATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTTA 3097
Query 70145 TTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTC 70204
| ||||||||||| || |||||||| || || ||||| ||||||| || || ||||
Sbjct 3098 TCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTC 3157
Query 70205 TTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCA-TAACA 70263
| ||| |||| || | || || || || || | | ||| || | | | |
Sbjct 3158 TGTCGAAAATTATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACGATGTTGAGTGTCT 3217
Query 70264 GTAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCT 70323
| | ||||| || ||||| | | | |||| || || | |||||| | | ||
Sbjct 3218 GCTTG-GAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTACAGGTCC 3276
Query 70324 TCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTG 70383
||||| || ||||| || | || || || || ||||| | || || | || || |
Sbjct 3277 TCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGCGATCCGC 3336
Query 70384 GCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCT 70443
|| || || || || ||||| || |||| || || ||| || | || || |||||
Sbjct 3337 GCAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTCTGCAGCC 3396
Query 70444 AACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCT 70503
| ||| || | || | || || || || | || | || || || || ||||| |
Sbjct 3397 AGCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTTCATCGTA 3456
Query 70504 ATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGAT 70563
|| | | ||||| | ||| || | ||| || || || || | || ||||||||
Sbjct 3457 ATCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGATACGAGAG 3516
Query 70564 GTAATTTTATCAAACATAACATTCTCCT 70591
|| |||||||| ||||| ||| |||||
Sbjct 3517 GTGATTTTATCGAACATGACACGCTCCT 3544
Score = 93.3 bits (102), Expect = 6e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || ||||| ||||| || ||||||||| || | || || || || || || |
Sbjct 1260 TCCAGCCATAGAAGTGCATGCTGGTTAGTTTGCCGTAGTTCGGCTCTGCGATGTGGATGT 1319
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
||| ||| || || || |||||||| | || | || || ||||| || || || |||
Sbjct 1320 TCAGCGACTGGCTCTGGTCGATGAAGGTGCCGCGGTCGGCGGCCATCTTGATTATGGTCT 1379
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | |||||||||| || ||| | | ||| || | |||||||||||
Sbjct 1380 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGGAA 1430
>seq101000
Length=9675
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||| || ||||| | ||||| || | || || |||||||||| || | ||| |
Sbjct 896 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAATCCTCTCTTCT 837
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
|||||||| | |||||||| || || ||||| ||||||||||| || ||||||||||| |
Sbjct 836 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCAAAAG 777
Query 39759 CAACAAGTCTCTCTCC 39774
| |||| || ||| ||
Sbjct 776 CTACAATTCGCTCCCC 761
>seq55784
Length=9571
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384
|||||||| || ||||| || ||||||| || |||||||| ||||| || ||||| ||
Sbjct 2627 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 2686
Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443
|| |||||||||||||| || || | || ||||| ||||| ||||||| || || ||
Sbjct 2687 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTCTGTCTGAGACTCAATGAT 2745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685494686612520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |