Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq154442 105 5e-18
seq60829 104 2e-17
seq36767 95.1 1e-14
>seq154442
Length=3669
Score = 105 bits (116), Expect = 5e-18
Identities = 94/118 (80%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387
||||||||||||||||| || ||| |||| || || || || |||||||| | |||||
Sbjct 1916 CCTGCTCCCAGTTTACTGAAGTCTCTCTTGGACTGGAACGTGTAGACTGTTAGTCCAGCG 1857
Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445
||||||||||| || | || | | ||| |||| |||||| |||||||||||||||
Sbjct 1856 AACACAGCACAGGTCAGGAACAAGGCTTGCAGTACAGTGGAGCATTCATAGAAGGTCA 1799
>seq60829
Length=3662
Score = 104 bits (114), Expect = 2e-17
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924
|||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||| |
Sbjct 2737 CTCTGAAGAACGCCCAGGCATCTTTCTCTGATGCAAACTTCTTAAAAGAGGCGGCTGGAA 2678
Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954
|||| || || ||| |||||||||||||||
Sbjct 2677 ATTTCTCCACCTGGTTCTTACATTCATCCC 2648
Score = 87.8 bits (96), Expect = 1e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 77576 AGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTT 77635
|||||||| || | ||||| || || || ||||| |||||||| ||||||||||||
Sbjct 3458 AGCGGGTGGTTGTGGCCCCAGTACACTCCGATGCCGGCTCGGGCGCCCTTCTGTCCGTTT 3399
Query 77636 GATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACC 77676
|||| |||||||| |||||||| ||||||||||| ||
Sbjct 3398 CTCGAGCAGCAGCCGTCGGTGTAGACGACCACGGCGTCGCC 3358
>seq36767
Length=881
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 77302 GATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATC 77361
||| | || |||||| ||||||| ||| || || |||||||| ||| |||||| ||
Sbjct 660 GATATTCACCCAGACCACCTCCACCTCTGCGTTCAGCCGGTCCAGCGTCACAAAGTCGTC 601
Query 77362 CTTGTTGACAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAAC 77421
|||||| | | |||||| | ||||| |||||||||| ||||||||||||| ||
Sbjct 600 TTTGTTGGTGATCGGGCCTCCGGACTTCAGCCGCCAGCCGTTCAGCTTCCAGTTCTTCAC 541
Query 77422 CCACTTAGTCACACC 77436
||| | ||||||||
Sbjct 540 CCAGCTGGTCACACC 526
Score = 89.7 bits (98), Expect = 4e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492
|||| ||||| |||||| ||||||| ||||||| |||||||||||||| |||||| |
Sbjct 107 CACCGTTGATCGTGAACTTGCTGTCGGTGTAGAGGACCAGCTTCTTGAGGCCGTTCTCTT 48
Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524
||||||| ||| |||||| | || ||||||
Sbjct 47 TGGCTTGTTCCAGCGCTTTGCAGGCCGCCTGG 16
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396658227931465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |