Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq154442 105 5e-18 seq60829 104 2e-17 seq36767 95.1 1e-14 >seq154442 Length=3669 Score = 105 bits (116), Expect = 5e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 ||||||||||||||||| || ||| |||| || || || || |||||||| | ||||| Sbjct 1916 CCTGCTCCCAGTTTACTGAAGTCTCTCTTGGACTGGAACGTGTAGACTGTTAGTCCAGCG 1857 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||||| || | || | | ||| |||| |||||| ||||||||||||||| Sbjct 1856 AACACAGCACAGGTCAGGAACAAGGCTTGCAGTACAGTGGAGCATTCATAGAAGGTCA 1799 >seq60829 Length=3662 Score = 104 bits (114), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 |||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||| | Sbjct 2737 CTCTGAAGAACGCCCAGGCATCTTTCTCTGATGCAAACTTCTTAAAAGAGGCGGCTGGAA 2678 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 |||| || || ||| ||||||||||||||| Sbjct 2677 ATTTCTCCACCTGGTTCTTACATTCATCCC 2648 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 77576 AGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTT 77635 |||||||| || | ||||| || || || ||||| |||||||| |||||||||||| Sbjct 3458 AGCGGGTGGTTGTGGCCCCAGTACACTCCGATGCCGGCTCGGGCGCCCTTCTGTCCGTTT 3399 Query 77636 GATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACC 77676 |||| |||||||| |||||||| ||||||||||| || Sbjct 3398 CTCGAGCAGCAGCCGTCGGTGTAGACGACCACGGCGTCGCC 3358 >seq36767 Length=881 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 77302 GATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATC 77361 ||| | || |||||| ||||||| ||| || || |||||||| ||| |||||| || Sbjct 660 GATATTCACCCAGACCACCTCCACCTCTGCGTTCAGCCGGTCCAGCGTCACAAAGTCGTC 601 Query 77362 CTTGTTGACAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAAC 77421 |||||| | | |||||| | ||||| |||||||||| ||||||||||||| || Sbjct 600 TTTGTTGGTGATCGGGCCTCCGGACTTCAGCCGCCAGCCGTTCAGCTTCCAGTTCTTCAC 541 Query 77422 CCACTTAGTCACACC 77436 ||| | |||||||| Sbjct 540 CCAGCTGGTCACACC 526 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| ||||| |||||| ||||||| ||||||| |||||||||||||| |||||| | Sbjct 107 CACCGTTGATCGTGAACTTGCTGTCGGTGTAGAGGACCAGCTTCTTGAGGCCGTTCTCTT 48 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| |||||| | || |||||| Sbjct 47 TGGCTTGTTCCAGCGCTTTGCAGGCCGCCTGG 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396658227931465