Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq137229 194 2e-44 seq55784 86.0 8e-12 >seq137229 Length=11157 Score = 194 bits (214), Expect = 2e-44 Identities = 648/990 (65%), Gaps = 29/990 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||| |||| || || ||||| Sbjct 1605 CTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTGAC 1664 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| || | ||||||||| | ||||| ||||| | Sbjct 1665 GATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCGAT 1724 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || |||||||||||||| ||||| || |||| || || Sbjct 1725 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAG 1784 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 |||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 1785 ACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGGTC 1844 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910 | | || || || |||||||||| |||| || | |||||| |||| ||||| || Sbjct 1845 GGTGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCC 1901 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 || | || || |||| || | | | |||| |||||||||||||| | || Sbjct 1902 TTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGC 1961 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 || || ||||| |||||||| || |||| | || |||||| ||||||| Sbjct 1962 GTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGG 2021 Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 ||| || | || || |||| || | |||||| ||||| | || || || ||||| Sbjct 2022 GTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGTG 2081 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCG 111147 ||| | || ||||| | | | ||| || ||||| || ||| ||||||| Sbjct 2082 GCGCTTGTTGGACTT---CTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTT 2138 Query 111148 GTTTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAAAAGT 111204 ||| | || ||| || || | || | | ||| ||||||||| | ||||| || Sbjct 2139 GTTCAAGTTCTTG---ACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTCAAACGT 2195 Query 111205 GCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGT 111264 | ||| |||| ||| | || |||||||| |||| |||||| || || Sbjct 2196 CTG---CTCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTAC 2252 Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 ||| || | ||||| || | ||||||||| || | |||| ||| || || || Sbjct 2253 CTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCC 2312 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| |||||| || || ||||| |||||||| ||||| || Sbjct 2313 CAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACC 2372 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCG-GCGGCTGGTACAATGGCGT 111443 || || ||||| || | | ||| || | ||| || | | | || || || | Sbjct 2373 AGTTTCTGTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGC-T 2431 Query 111444 TGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 111502 || ||| || ||| ||| || |||||||| |||||||||||| ||| | || Sbjct 2432 TGACCCTCCCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTC-CCCCCAGCAC 2490 Query 111503 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAA 111560 ||| || || || || || ||||| | |||||||| | | || |||| | Sbjct 2491 TCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAGACCA--GTCTTGGTTGCCCTCTA 2548 Query 111561 CCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | | ||||||||| ||||| || ||||||| Sbjct 2549 CTCTCTTCATGAACAGGTCAGGGATCCACA 2578 >seq55784 Length=9571 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||||||| || ||||| || | ||| || || || || Sbjct 2602 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 2661 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || ||||||||||||||||| || || || Sbjct 2662 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACC 2721 Query 111385 CGTCTCCGTCTGTGA 111399 || || ||||| || Sbjct 2722 GGTTTCTGTCTGAGA 2736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626739094072800