Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq137229 127 3e-24 seq55784 89.7 6e-13 seq51583 84.2 3e-11 >seq137229 Length=11157 Score = 127 bits (140), Expect = 3e-24 Identities = 880/1397 (63%), Gaps = 56/1397 (4%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| || || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 1699 TAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1758 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 ||||||||||| || |||| || || ||||| | | || | | || ||| Sbjct 1759 GCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 1818 Query 118302 TTGAGAGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355 || || | |||||| || | || || | |||||| |||| || || Sbjct 1819 TTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 1872 Query 118356 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAA 118410 || ||||| || | | |||| || || || || | ||||| || ||||| |||| Sbjct 1873 TGCAGGATGCCCTTGCTGACG--GGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAG 1930 Query 118411 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAG 118470 | || ||| | |||||||||| || || |||| || || || ||||| || || Sbjct 1931 CGGCCAG-AATGC--AGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAA 1987 Query 118471 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 118530 |||| || || || | ||||| | | || | || || |||| | Sbjct 1988 TGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATCTG 2047 Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590 | | |||||| ||||| | || ||||| | || | | | || |||||| || Sbjct 2048 CCAAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAG 2107 Query 118591 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 ||| ||||| || || || || | | | || | || ||| || || || || | Sbjct 2108 GCACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCA 2167 Query 118651 TTTCATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGA 118706 ||| || ||||| | ||||| |||| ||| |||| ||| | Sbjct 2168 CGG-ATGCTAGTTTTTCAAAGTCAAAC------GTCTGCTCAGGGGTGACGTACATGTTG 2220 Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 || |||||||| |||||||| || || | ||| || | ||||| || | |||| Sbjct 2221 AGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATT 2280 Query 118767 TCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 118824 || ||||| | ||| || ||| | |||||||||| |||| || || ||| || Sbjct 2281 TCTGTGCAGAGGTTGCTGGACT--TGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGT 2338 Query 118825 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 118884 | || || || ||||| |||||||||||||| || || || || ||||||| | ||| | Sbjct 2339 TGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGG 2398 Query 118885 CCTTCCAGACATCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTT 118943 | | ||| || | ||| || || || ||| | | ||| || | ||| || Sbjct 2399 CATGCCACACCTGTTGAGCCTTCACCACACGC-TTGACCCTCCCGTCCTTCTCATAGGAG 2457 Query 118944 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003 |||||||| ||||||||| || ||| | ||| ||||| || || | || Sbjct 2458 GTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGA 2517 Query 119004 CAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 || | |||||||| ||| | |||| || | ||||||||| ||||| |||||| Sbjct 2518 CACATCAGAGACCAGTCTTGGTTGC---CCTCTACTCTCTTCATGAACAGGTCAGGGATC 2574 Query 119061 CAGAGCGCCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 || | |||| |||| || || | | | ||| || | | ||| || || || Sbjct 2575 CACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTCA 2632 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC-- 119176 ||||| ||||| | | ||| |||||| || || ||||||| |||| | ||| Sbjct 2633 GCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGG 2692 Query 119177 --CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 || | ||| |||||| ||||| | || || ||| | || | ||||| Sbjct 2693 GTCTCTTG-TTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATG 2751 Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 119294 || | || || | ||| | ||| || || || ||| | | | ||||| Sbjct 2752 GGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATG 2811 Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 119354 | || | || ||| || || || || |||| ||||| | ||||| | | | | Sbjct 2812 CAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAG 2871 Query 119355 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414 || ||||||| || ||||| ||| | || | |||| | ||||||||| |||| Sbjct 2872 GTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGC 2931 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TG 119473 || ||||| || || ||||||||||| || || | |||||| ||||| || | | Sbjct 2932 TGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAAC-CACTTCTC 2990 Query 119474 GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 119533 |||| | || || ||||| | ||| ||| ||| || | | || || || | || Sbjct 2991 CGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCATGGATCCCAACAGA 3050 Query 119534 GACCCGCATAAACATGT 119550 || ||||| | ||||| Sbjct 3051 CACTCGCATGAGCATGT 3067 >seq55784 Length=9571 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| ||||| ||||| Sbjct 1685 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTTCCCAGGATCTGGGCAGTGGAA 1744 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| ||||||| ||| || ||||| Sbjct 1745 GCTGTGGGCATTGGTGCCAAGAGCAGACTGTT 1776 >seq51583 Length=2687 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || | ||| || |||||||||||||| |||||||| Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCAC 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617162050645080