Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 127 3e-24
seq55784 89.7 6e-13
seq51583 84.2 3e-11
>seq137229
Length=11157
Score = 127 bits (140), Expect = 3e-24
Identities = 880/1397 (63%), Gaps = 56/1397 (4%)
Strand=Plus/Plus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| || || | | |||| ||||| |||| ||| ||||| ||||||
Sbjct 1699 TAGATGTTGCTGGTGTAGGGTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1758
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301
||||||||||| || |||| || || ||||| | | || | | || |||
Sbjct 1759 GCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 1818
Query 118302 TTGAGAGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355
|| || | |||||| || | || || | |||||| |||| || ||
Sbjct 1819 TTCAGCAGTTTCCAGTCCAACCGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 1872
Query 118356 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAA 118410
|| ||||| || | | |||| || || || || | ||||| || ||||| ||||
Sbjct 1873 TGCAGGATGCCCTTGCTGACG--GGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAG 1930
Query 118411 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAG 118470
| || ||| | |||||||||| || || |||| || || || ||||| || ||
Sbjct 1931 CGGCCAG-AATGC--AGCTCGCCTCCAGAGCGGCGTAGTAAATGGTCTCAAAGATCTGAA 1987
Query 118471 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 118530
|||| || || || | ||||| | | || | || || |||| |
Sbjct 1988 TGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGGGTAACGCATGAGGATGAAGGCATCTG 2047
Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590
| | |||||| ||||| | || ||||| | || | | | || |||||| ||
Sbjct 2048 CCAAACCTTGTACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAG 2107
Query 118591 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650
||| ||||| || || || || | | | || | || ||| || || || || |
Sbjct 2108 GCACAGGATAGAAGTTTACTTCAATGATCTTGTTCAAGTTCTTGACGATTACTTTGGTCA 2167
Query 118651 TTTCATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGA 118706
||| || ||||| | ||||| |||| ||| |||| ||| |
Sbjct 2168 CGG-ATGCTAGTTTTTCAAAGTCAAAC------GTCTGCTCAGGGGTGACGTACATGTTG 2220
Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766
|| |||||||| |||||||| || || | ||| || | ||||| || | ||||
Sbjct 2221 AGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATT 2280
Query 118767 TCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 118824
|| ||||| | ||| || ||| | |||||||||| |||| || || ||| ||
Sbjct 2281 TCTGTGCAGAGGTTGCTGGACT--TGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGT 2338
Query 118825 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 118884
| || || || ||||| |||||||||||||| || || || || ||||||| | ||| |
Sbjct 2339 TGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGG 2398
Query 118885 CCTTCCAGACATCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTT 118943
| | ||| || | ||| || || || ||| | | ||| || | ||| ||
Sbjct 2399 CATGCCACACCTGTTGAGCCTTCACCACACGC-TTGACCCTCCCGTCCTTCTCATAGGAG 2457
Query 118944 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003
|||||||| ||||||||| || ||| | ||| ||||| || || | ||
Sbjct 2458 GTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGA 2517
Query 119004 CAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060
|| | |||||||| ||| | |||| || | ||||||||| ||||| ||||||
Sbjct 2518 CACATCAGAGACCAGTCTTGGTTGC---CCTCTACTCTCTTCATGAACAGGTCAGGGATC 2574
Query 119061 CAGAGCGCCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118
|| | |||| |||| || || | | | ||| || | | ||| || || ||
Sbjct 2575 CACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTCA 2632
Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC-- 119176
||||| ||||| | | ||| |||||| || || ||||||| |||| | |||
Sbjct 2633 GCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGG 2692
Query 119177 --CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234
|| | ||| |||||| ||||| | || || ||| | || | |||||
Sbjct 2693 GTCTCTTG-TTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATG 2751
Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 119294
|| | || || | ||| | ||| || || || ||| | | | |||||
Sbjct 2752 GGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATG 2811
Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 119354
| || | || ||| || || || || |||| ||||| | ||||| | | | |
Sbjct 2812 CAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAG 2871
Query 119355 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 119414
|| ||||||| || ||||| ||| | || | |||| | ||||||||| ||||
Sbjct 2872 GTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGC 2931
Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TG 119473
|| ||||| || || ||||||||||| || || | |||||| ||||| || | |
Sbjct 2932 TGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAAC-CACTTCTC 2990
Query 119474 GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGA 119533
|||| | || || ||||| | ||| ||| ||| || | | || || || | ||
Sbjct 2991 CGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCATGGATCCCAACAGA 3050
Query 119534 GACCCGCATAAACATGT 119550
|| ||||| | |||||
Sbjct 3051 CACTCGCATGAGCATGT 3067
>seq55784
Length=9571
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| ||||| |||||
Sbjct 1685 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTTCCCAGGATCTGGGCAGTGGAA 1744
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273
||||||||||| ||||||| ||| || |||||
Sbjct 1745 GCTGTGGGCATTGGTGCCAAGAGCAGACTGTT 1776
>seq51583
Length=2687
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 842 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCT 901
Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||| || | ||| || |||||||||||||| ||||||||
Sbjct 902 TCAGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCAC 950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617162050645080
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