Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq137229 192 7e-44 seq55784 87.8 2e-12 seq51583 87.8 2e-12 seq101000 84.2 3e-11 >seq137229 Length=11157 Score = 192 bits (212), Expect = 7e-44 Identities = 655/1004 (65%), Gaps = 25/1004 (2%) Strand=Plus/Minus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 || || |||| || | ||||| || || || |||||||||||||| |||| | Sbjct 2594 GACCTTTTCTACGGCATGTGGATCCCTGACCTGTTCATGAAGAGAGTAGAGGGCAACCAA 2535 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGA 104817 | |||||||| | ||||| || || || || || ||| ||| | ||| ||||| Sbjct 2534 GACTGGTCTCTGATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGA 2476 Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC-GGTGCCAG 104876 ||||||| || ||||| || ||| | || || ||| | ||| |||| | Sbjct 2475 GTTTGAAAAGCTCTACACCTCCTATGAGAAGGACGGGAGGGTCAA-GCGTGTGGTGAAGG 2417 Query 104877 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGC 104936 || | |||||| | || ||| | |||| || || || |||||||| |||||||||| Sbjct 2416 CTCAACAGGTGTGGCATGCCATTATTGAGTCCCAGACAGAAACTGGTACGCCATACATGC 2357 Query 104937 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 104996 | |||||||||||||| |||| ||||| || || ||||| |||| |||||| Sbjct 2356 TGTACAAAGACGCCTGCAACCGGAAGAGCAACCACCAGAATCTGGGCACCATCAAGTCCA 2297 Query 104997 CCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACC 105056 ||| ||||| |||||||| | |||| || | | || ||| || || || || | Sbjct 2296 GCAACCTCTGCACAGAAATTGTTGAATACACCAGCCACGACGAGGTAGCCGTCTGCAATC 2237 Query 105057 TCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAA 105116 | || |||||||| ||| || ||| || || ||| |||| ||||| | ||||| Sbjct 2236 TGGCCTCAATCGCGCTCAACATGTACGTCACCCCTGAG---CAGACGTTTGACTTTGAAA 2180 Query 105117 AACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATT 105176 |||| || || ||| || ||| ||| | |||| | ||||| ||| | Sbjct 2179 AACTAGCATCCGTGACCAAAGTAATCGTCAAGAACTTGAACAAGATCATTGAAGTAAACT 2120 Query 105177 TTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 105233 | || || || ||| || || || || | | | ||| | ||||| || | | Sbjct 2119 TCTATCCTGTGCCTGA---AGCAGAGAAGTCCAACAAGCGCCACAGGCCAATAGGAATTG 2063 Query 105234 GTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAG 105293 |||| || ||| | || |||| ||||| || || || ||||||| | |||| Sbjct 2062 GTGTACAAGGTTTGGCAGATGCCTTCATCCTCATGCGTTACCCATTTGAAAGCCCTGAAG 2003 Query 105294 CGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAG-T 105352 | || | || | || ||||||||||| || |||||||||| |||||||| | Sbjct 2002 CTCAGCTGCTGAACATTCAGATCTTTGAGACCATTTACTACGCCGCTCTGGAGGCGAGCT 1943 Query 105353 TCAGAGTTG--GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA- 105409 || | | || ||| | || || || || || | || || ||||| | ||| Sbjct 1942 GCATTCTGGCCGCTGAGCT---CGGCCCCTACGAGACGTACGAAGGCTCTCC--CGTCAG 1888 Query 105410 CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGACTGGG 105467 |||||| | || || | || ||||||| || || | ||| | | |||||| Sbjct 1887 CAAGGGCATCCTGCAGTACGACATGTGGG-AGAAGACGCCCACCGACCGGTTGGACTGGA 1829 Query 105468 AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAA 105527 || || ||||| ||| || | || | | |||||||| || |||| || | Sbjct 1828 AACTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCCCGA 1769 Query 105528 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587 |||| |||||||||||||| || ||| |||| || || || | | | ||||||||||| | Sbjct 1768 TGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAACCCTACACCA 1709 Query 105588 CGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCG 105647 |||||||| | || |||| | ||||||||| ||| ||||| ||||| Sbjct 1708 GCAACATCTACACCCGCAGGGTCCTCTCTGGAGAGTTTCAGATCGTCAATCCTCATCTGC 1649 Query 105648 TGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | | ||| | | ||||| || || ||| | |||| |||||| Sbjct 1648 TCAAAGACTTGACAGAGAGAGGACTGTGGAGCGAGGAGATGAAG 1605 >seq55784 Length=9571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 |||||| | || || | ||||||| || || || ||||||||||||||||| ||||| Sbjct 2757 GTGTGGCACGCCATCATTGAGTCTCAGACAGAAACCGGTACACCATACATGCTCTACAAG 2698 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 |||||||| ||| ||||| || || ||||| |||| ||||| |||||| Sbjct 2697 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 2638 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || ||||| ||| | || | || |||||||||| Sbjct 2637 TGCACAGAGATCGTAGAGTACACGAGCAAAGATGAG 2602 >seq51583 Length=2687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| |||||||||||||||||||| | | || | ||||| |||||| |||| Sbjct 950 GTGGAGGGAATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGC 891 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 || ||||| || || ||||||||||||||| ||| | ||||||| ||| Sbjct 890 CTGATGCCTGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGGTACT 838 >seq101000 Length=9675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||| | | || ||||| || ||||| |||||||||||||| || ||| || Sbjct 764 GAGCGAATTGTAGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCTGCC 823 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || ||||||||||||||| |||| | ||||| || || || |||||||||||| || Sbjct 824 ATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582060062863320