Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq137229 244 1e-59 seq101000 100 3e-16 seq55784 96.9 4e-15 seq51583 91.5 2e-13 >seq137229 Length=11157 Score = 244 bits (270), Expect = 1e-59 Identities = 523/769 (68%), Gaps = 22/769 (3%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || ||||| ||||| ||||| |||||| |||| | || | ||||||||||| Sbjct 2230 GAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAG 2289 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || |||||||||||||| | |||| |||||||||||| ||| |||||||| Sbjct 2290 AGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCT 2349 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||||| |||||| ||||| || || || ||| || | || | | | ||| | Sbjct 2350 TTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACC 2409 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACG--TACGTCCGGTACAACT 79294 | | ||| || || |||| ||| ||| || | | || | ||| | || Sbjct 2410 TGTTGAGCCTTCACCACACGCTTG-ACCCTCCC-GTCCTTCTCATAGGAGGTGTAGAGCT 2467 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | || ||||||| || ||| ||| || |||||||||| || |||||||| Sbjct 2468 TTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAG 2527 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-G 79413 |||||| | || ||| || ||| |||||| ||||| |||||||||| | |||| | Sbjct 2528 ACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATG-CCGTAG 2586 Query 79414 AAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCC 79473 || ||||| | | | | |||||| | ||| |||| |||||| || ||||| Sbjct 2587 AAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCA 2646 Query 79474 ATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCG 79533 | | || |||||| ||||| || || |||||||| | || | |||| || Sbjct 2647 AACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCA 2706 Query 79534 CCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCG 79593 ||||||| || || || ||||| |||||| |||||| |||||||| |||| |||| | Sbjct 2707 CCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTG 2766 Query 79594 GCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC-GA-GCAGTGGA 79651 | | |||||| || || || ||| |||| |||| || || || |||| || Sbjct 2767 GAGTTGCCGTTGGTGCCAGCAAT----GTA--GCTC-CCCGT-TGATCTGATGCAGCTGA 2818 Query 79652 TT------CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 |||||||| || | ||||||||||| | ||||| | ||| | || |||| Sbjct 2819 CGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCGCATTGCTTCAAGGTGTCGT 2878 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT 79765 ||||||| ||||| |||||| ||||| |||| || ||||||||| |||| |||||| Sbjct 2879 AGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGTGGCC 2938 Query 79766 TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT 79814 | || || || ||||||||||| || || | ||||| ||||| |||| Sbjct 2939 TATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTGAACCACTT 2987 Score = 165 bits (182), Expect = 9e-36 Identities = 391/584 (67%), Gaps = 10/584 (2%) Strand=Plus/Minus Query 19102 GCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCC-CGCGAG 19160 ||| ||| || | |||||||||| | || || ||||||| | || | ||| || Sbjct 3075 GCCGCAGCACATGCTCATGCGAGTGTCTGTTGGGATCCATGAAAATGATATTGACGC-AG 3017 Query 19161 TCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTT 19220 || |||||| || ||||| || |||||| ||||| ||||| | || || || | Sbjct 3016 TCATCGAGACTTATAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCTACGCTCT 2957 Query 19221 TCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 ||||||| || || || | || ||| |||| ||||| ||| | | || ||||| || | Sbjct 2956 TCAACGCAGGAACCAATAGGCCACAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGACG 2897 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 ||||||| || ||||||||||| || | ||| | ||||| | ||||||||||| | | Sbjct 2896 ACAGCATCGAAGGCATCTACGACACCTTGAAGCAATGCGCCCTCATCTCCAAGTCAGCTG 2837 Query 19341 GGGGTATCGG---GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGA 19397 | || ||||| | | | ||| ||| | || | || | || ||| | Sbjct 2836 GAGGCATCGGTGTGGCCGTCAGCT---GCATCAGATCAACGGGGAGCTACATTGCTGGCA 2780 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | ||||| || |||| ||||||| ||||| | || | |||||| ||||| | | Sbjct 2779 CCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTTTACAACAATACGGCACGTT 2720 Query 19458 ACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGC 19517 | || ||||||| || ||| | || | |||||||| ||||| ||||| |||| Sbjct 2719 ATGTGGACCAGGGTGGGAACAAGAGACCCGGGGCCTTCGCCATGTACCTAGAGCCCTGGC 2660 Query 19518 ACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCT 19577 || || || | || ||||| || ||| |||| ||| | |||||| | | Sbjct 2659 ACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGAGAG 2600 Query 19578 GTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636 | ||||| ||| |||| | ||||||| || ||||| |||||| ||| || ||| Sbjct 2599 CCAGAGACCTTTTCTACGG-CATGTGGATCCCTGACCTGTTCATGAAGAGAGTAGAGGGC 2541 Query 19637 GACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 || |||| ||| |||||||| || |||| ||||| || || Sbjct 2540 AACCAAGACTGGTCTCTGATGTGTCCCAACGAGTGCCCCGGGCT 2497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| || | ||| || ||| |||||||||| | ||||| || |||| | |||| Sbjct 1672 AACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCGATGGACTCG 1731 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGA 78621 ||||| |||| |||||||||||| ||||| || ||||| || || | ||| ||| Sbjct 1732 TTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGA 1785 >seq101000 Length=9675 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 59989 TAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGC 60048 ||||||||||| ||||| || ||||||||||||||||| ||| ||| || | |||| Sbjct 774 TAGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCTGCCATCTATTGGC 833 Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108 |||| ||| | || | ||||| ||||| | | |||||||||||||||| | |||| | Sbjct 834 TCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCAGGGATG 893 Query 60109 AGG 60111 ||| Sbjct 894 AGG 896 >seq55784 Length=9571 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| |||||||||| ||| || ||||||||||| | |||| ||||||||| Sbjct 2620 CTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCT 2679 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||| || || ||||| || Sbjct 2680 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTC 2727 >seq51583 Length=2687 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| || || | || |||||||| || ||| | || Sbjct 951 CGTGGAGGGAATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGG 892 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| |||||||||||||| || | | ||||||| Sbjct 891 CCTGATGCCTGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 842 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 196 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGCAAGACC 137 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 136 AACTTCTTTGAGAAGCGCGTGGGCGAGTA 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547395572563920