Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq137229 170 2e-37 seq97685 100 3e-16 seq55250 89.7 6e-13 seq101000 84.2 2e-11 >seq137229 Length=11157 Score = 170 bits (188), Expect = 2e-37 Identities = 468/704 (66%), Gaps = 16/704 (2%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || |||||||| || || ||| || ||| || Sbjct 2987 AAGTGGTTCACCCACGCCTCTCCTACGCTCTTCAACGCAGGAACCAATAGGCCACAGCTG 2928 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||||||| || | || ||||| || ||| ||||| ||||||||||| || | Sbjct 2927 TCCAGCTGCTTCTTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTACGACACCTTG 2868 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| | || |||| ||||||||||| | || || |||||| | | | ||| | Sbjct 2867 AAGCAATGCGCCCTCATCTCCAAGTCAGCTGGAGGCATCGGTGTGGCCGTCAGCT---GC 2811 Query 53444 GTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 || | | ||||| | | || || || |||||| | || | || |||| || Sbjct 2810 ATCAGATC-AACGGGGAGCTACATTGCTGGCACCAACGGCAACTCCAACGGGCTCGTCCC 2752 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 ||||| | || | |||||| ||||| || || || |||||||||| ||| | Sbjct 2751 CATGCTGAGAGTTTACAACAATACGGCACGTTATGTGGACCAGGGTGGGAACAAGAGACC 2692 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 ||| | |||||||| ||||| ||||| |||||| || | | || || || ||||| Sbjct 2691 CGGGGCCTTCGCCATGTACCTAGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCT 2632 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGA 53681 | ||| ||| | || ||| | | | | ||||| || ||| || |||||| Sbjct 2631 GAAGAAGAACACGGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTACGGC-ATGTGGA 2573 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741 | || ||||| |||||| | | || ||| || | || |||| |||||||| || | Sbjct 2572 TCCCTGACCTGTTCATGAAGAGAGTAGAGGGCAACCAAGACTGGTCTCTGATGTGTCCCA 2513 Query 53742 ACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG 53800 ||||||||||||| || | | ||| || || ||||||||| | || | || | Sbjct 2512 ACGAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAAAAGCTCTACACCTCC 2454 Query 53801 TA--CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAA 53858 || | || | ||| | | |||| ||| ||||| | |||| ||| |||| | Sbjct 2453 TATGAGAAGGAC-GGGAGGGT-CAAGCGTGTGGTGAAGGCTCAACAGGTGTGGCATGCCA 2396 Query 53859 TCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACG 53918 | | || |||| || || || ||||| |||||| ||||| || | |||| Sbjct 2395 TTATTGAGTCCCAGACAGAAACTGGTACGCCATACATGCTGTACAAAGACGCCTGCAACC 2336 Query 53919 AGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| |||| | ||| |||||| || |||||| Sbjct 2335 GGAAGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAAC 2292 >seq97685 Length=8332 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| ||||| || ||||| ||| | || |||||||| || Sbjct 6751 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCGAACTGA 6810 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| ||||||| |||||||||||| || |||||||| || Sbjct 6811 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACG 6870 Query 117425 ATCGT 117429 || || Sbjct 6871 ATGGT 6875 >seq55250 Length=6286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACC-TGCCAGCCGCGTTCCAAACTG 152087 |||||||||||||| | |||||| | ||||||||||| ||| | | | ||||||||||| Sbjct 2669 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAATCTG-GTTCCAAACTG 2727 Query 152088 -TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 ||||| |||| || ||||| | ||||||| ||||| || ||||| || ||| || Sbjct 2728 ACCCAGA-GGCTGCAGCAGGTTCAAGTTGTTGCTTCCCACAAAGTTCTGGGCTAAACCCA 2786 Query 152147 CAATCGT 152153 |||| || Sbjct 2787 CAATGGT 2793 >seq101000 Length=9675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| |||| || || || | | |||||||||||| | ||| | |||||| Sbjct 894 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAATCCTCTCTTCTTG 835 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| |||||||| ||| || ||| |||||||||||| || || ||||| || Sbjct 834 AGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCAAAAGCT 775 Query 74892 ACAA 74895 |||| Sbjct 774 ACAA 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546089466941400