Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 170 2e-37
seq97685 100 3e-16
seq55250 89.7 6e-13
seq101000 84.2 2e-11
>seq137229
Length=11157
Score = 170 bits (188), Expect = 2e-37
Identities = 468/704 (66%), Gaps = 16/704 (2%)
Strand=Plus/Minus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
|||| || || |||||| | || || || |||||||| || || ||| || ||| ||
Sbjct 2987 AAGTGGTTCACCCACGCCTCTCCTACGCTCTTCAACGCAGGAACCAATAGGCCACAGCTG 2928
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
|| ||||||||| || | || ||||| || ||| ||||| ||||||||||| || |
Sbjct 2927 TCCAGCTGCTTCTTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTACGACACCTTG 2868
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443
||| | || |||| ||||||||||| | || || |||||| | | | ||| |
Sbjct 2867 AAGCAATGCGCCCTCATCTCCAAGTCAGCTGGAGGCATCGGTGTGGCCGTCAGCT---GC 2811
Query 53444 GTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502
|| | | ||||| | | || || || |||||| | || | || |||| ||
Sbjct 2810 ATCAGATC-AACGGGGAGCTACATTGCTGGCACCAACGGCAACTCCAACGGGCTCGTCCC 2752
Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562
||||| | || | |||||| ||||| || || || |||||||||| ||| |
Sbjct 2751 CATGCTGAGAGTTTACAACAATACGGCACGTTATGTGGACCAGGGTGGGAACAAGAGACC 2692
Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622
||| | |||||||| ||||| ||||| |||||| || | | || || || |||||
Sbjct 2691 CGGGGCCTTCGCCATGTACCTAGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCT 2632
Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGA 53681
| ||| ||| | || ||| | | | | ||||| || ||| || ||||||
Sbjct 2631 GAAGAAGAACACGGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTACGGC-ATGTGGA 2573
Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741
| || ||||| |||||| | | || ||| || | || |||| |||||||| || |
Sbjct 2572 TCCCTGACCTGTTCATGAAGAGAGTAGAGGGCAACCAAGACTGGTCTCTGATGTGTCCCA 2513
Query 53742 ACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG 53800
||||||||||||| || | | ||| || || ||||||||| | || | || |
Sbjct 2512 ACGAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAAAAGCTCTACACCTCC 2454
Query 53801 TA--CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAA 53858
|| | || | ||| | | |||| ||| ||||| | |||| ||| |||| |
Sbjct 2453 TATGAGAAGGAC-GGGAGGGT-CAAGCGTGTGGTGAAGGCTCAACAGGTGTGGCATGCCA 2396
Query 53859 TCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACG 53918
| | || |||| || || || ||||| |||||| ||||| || | ||||
Sbjct 2395 TTATTGAGTCCCAGACAGAAACTGGTACGCCATACATGCTGTACAAAGACGCCTGCAACC 2336
Query 53919 AGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962
|||||||||||| |||| | ||| |||||| || ||||||
Sbjct 2335 GGAAGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAAC 2292
>seq97685
Length=8332
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| ||| ||||| || ||||| ||| | || |||||||| ||
Sbjct 6751 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCGAACTGA 6810
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| ||||| || || ||||| ||||||| |||||||||||| || |||||||| ||
Sbjct 6811 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACG 6870
Query 117425 ATCGT 117429
|| ||
Sbjct 6871 ATGGT 6875
>seq55250
Length=6286
Score = 89.7 bits (98), Expect = 6e-13
Identities = 99/127 (78%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACC-TGCCAGCCGCGTTCCAAACTG 152087
|||||||||||||| | |||||| | ||||||||||| ||| | | | |||||||||||
Sbjct 2669 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAATCTG-GTTCCAAACTG 2727
Query 152088 -TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146
||||| |||| || ||||| | ||||||| ||||| || ||||| || ||| ||
Sbjct 2728 ACCCAGA-GGCTGCAGCAGGTTCAAGTTGTTGCTTCCCACAAAGTTCTGGGCTAAACCCA 2786
Query 152147 CAATCGT 152153
|||| ||
Sbjct 2787 CAATGGT 2793
>seq101000
Length=9675
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||| ||||| |||| || || || | | |||||||||||| | ||| | ||||||
Sbjct 894 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAATCCTCTCTTCTTG 835
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||| |||||||| ||| || ||| |||||||||||| || || ||||| ||
Sbjct 834 AGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCAAAAGCT 775
Query 74892 ACAA 74895
||||
Sbjct 774 ACAA 771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546089466941400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |