Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq60745 174 1e-38 seq77726 111 1e-19 seq58637 86.0 5e-12 >seq60745 Length=27421 Score = 174 bits (192), Expect = 1e-38 Identities = 137/164 (84%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| |||||| |||||||| |||||||| | ||||||||||||||| || ||| Sbjct 2721 AGTCCTGTGATGTGAGCGATCATGTAGGTGAGGAGTGCGTAGCTGGCGATGTTGAAAGGC 2662 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| |||||||| || || | |||||| ||||| ||||| ||||| ||||| | | Sbjct 2661 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 2602 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| |||||||||| ||| ||||| || || || |||||||| Sbjct 2601 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGCGCCATGAG 2558 >seq77726 Length=2370 Score = 111 bits (122), Expect = 1e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 |||||||||||||||||||| | ||| | ||||| ||| |||||| ||||| || ||| Sbjct 1902 TTAAGCTCCCTGCTGAGGACAATGTTGATCCTGTTCTTCAAAGGTCTGTTCTTCTCAGGG 1961 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 114387 ||||| ||||| || |||||||||| |||||||| |||||||| Sbjct 1962 ATGGAAAACCATGTTCTTCTACCCATGATCACCACATTCTGCTT 2005 >seq58637 Length=5382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 ||| |||||| ||| ||||||| ||| |||| | || ||||| || |||| ||| ||| Sbjct 4763 ACTTTGGCAGGAGATGATATCTGTCTGGACTGATTTCAGGGAGGAATGTGTCACACTCAA 4822 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCAT 114153 |||| || | || ||||| ||||| ||| | ||||||||||||||||| Sbjct 4823 ATTGTTTCAGGATTTGCGTGACGAACAGTCTCCTGGTCCCCGGGCTCTCCAT 4874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405347950874998