Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq60745 174 1e-38
seq77726 111 1e-19
seq58637 86.0 5e-12
>seq60745
Length=27421
Score = 174 bits (192), Expect = 1e-38
Identities = 137/164 (84%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| |||||| |||||||| |||||||| | ||||||||||||||| || |||
Sbjct 2721 AGTCCTGTGATGTGAGCGATCATGTAGGTGAGGAGTGCGTAGCTGGCGATGTTGAAAGGC 2662
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|||||||| |||||||| || || | |||||| ||||| ||||| ||||| ||||| | |
Sbjct 2661 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 2602
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877
||||| |||||||||| ||| ||||| || || || ||||||||
Sbjct 2601 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGCGCCATGAG 2558
>seq77726
Length=2370
Score = 111 bits (122), Expect = 1e-19
Identities = 87/104 (84%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|||||||||||||||||||| | ||| | ||||| ||| |||||| ||||| || |||
Sbjct 1902 TTAAGCTCCCTGCTGAGGACAATGTTGATCCTGTTCTTCAAAGGTCTGTTCTTCTCAGGG 1961
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 114387
||||| ||||| || |||||||||| |||||||| ||||||||
Sbjct 1962 ATGGAAAACCATGTTCTTCTACCCATGATCACCACATTCTGCTT 2005
>seq58637
Length=5382
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101
||| |||||| ||| ||||||| ||| |||| | || ||||| || |||| ||| |||
Sbjct 4763 ACTTTGGCAGGAGATGATATCTGTCTGGACTGATTTCAGGGAGGAATGTGTCACACTCAA 4822
Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCAT 114153
|||| || | || ||||| ||||| ||| | |||||||||||||||||
Sbjct 4823 ATTGTTTCAGGATTTGCGTGACGAACAGTCTCCTGGTCCCCGGGCTCTCCAT 4874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405347950874998
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |