Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq101000 100 2e-16 seq51583 86.0 5e-12 >seq101000 Length=9675 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || ||||||||||| ||||| || | || | || |||||||| |||||||| || Sbjct 894 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAATCCTCTCTTCTTG 835 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||| | || || || ||||| ||||| ||||| ||||| || || || ||||| ||| Sbjct 834 AGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCAAAAGCT 775 Query 4692 ACTAATCG 4699 || | ||| Sbjct 774 ACAATTCG 767 >seq51583 Length=2687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| || || ||||| || || || | || ||||| | |||||||| || Sbjct 844 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCTCTCTTCTTC 903 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || | |||||| || ||||| ||||| || || || ||||| || || || Sbjct 904 AGCCAGAAGATGGAGGCAAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGGCC 963 Query 4692 AC 4693 || Sbjct 964 AC 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426192427777769