Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq60745 174 1e-38 seq21705 86.0 5e-12 >seq60745 Length=27421 Score = 174 bits (192), Expect = 1e-38 Identities = 143/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| |||||| |||||||| |||||||| | ||||||||||||||| || || Sbjct 2721 AGTCCTGTGATGTGAGCGATCATGTAGGTGAGGAGTGCGTAGCTGGCGATGTTGAAAGGC 2662 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| |||||||| ||||| | |||||| ||||||||||| ||||| || || | Sbjct 2661 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 2602 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| |||||||| | ||||||||| || || || ||||||||| || |||| Sbjct 2601 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGCGCCATGAGGGGCAGGTCT 2548 >seq21705 Length=437 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 69168 GTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTG 69227 || ||||||||||| |||||| | |||||||| | ||| || ||||| ||||||||| || Sbjct 436 GTTCTGATGACCTGTGAGGACGAAAAGGTGTATGCCTACGATGGAGAGGAGCTGCATTTG 377 Query 69228 GTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGC 69287 |||||| | || | ||| | | || || |||||| ||||| || | | | Sbjct 376 GTGGCTTCGAGCATGAAGCAGCTAAGTGAGGAGGGAATAAAGTATCCATCAGACACGTCC 317 Query 69288 TATTATCATGGGGAGGCCTTCAAACATATG 69317 || || | ||||||||||||||| | ||| Sbjct 316 TACTACAAAGGGGAGGCCTTCAAAGACATG 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368765526649283