Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 464 9e-126
seq55784 89.7 7e-13
>seq137229
Length=11157
Score = 464 bits (514), Expect = 9e-126
Identities = 1282/1956 (66%), Gaps = 13/1956 (1%)
Strand=Plus/Plus
Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120
||||| || || || |||||| | |||||||| || || | || |||||||||||
Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662
Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180
|| || ||||| |||||||| | || || || ||||| || || ||||| || |||||
Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722
Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240
| || || ||||| |||| || || || || || || || ||||| || |||| ||
Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782
Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300
| ||| || || | || || | ||| || || || || |||||| ||| | |
Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842
Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360
|| | || ||||| | ||||| || || || || || || | || ||
Sbjct 1843 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCT 1902
Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417
| || || || || || || || | | || || || ||||| |||| ||
Sbjct 1903 TCGTACGTCTCGTAGGGGCCGAGCTCAG---CGGCCAGAATGCAGCTCGCCTCCAGAGCG 1959
Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477
|||| ||||| || || || |||| | || || || |||||| || |||||
Sbjct 1960 GCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAAT 2019
Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537
|| ||| | | || || ||||||||||| || || || || ||||| || || || ||
Sbjct 2020 GGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTG 2079
Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597
|| | ||| ||||| | | ||||| || | |||||| | || | || || || ||
Sbjct 2080 TGGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTG 2139
Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC 77655
|| | || | || | |||||| |||| |||||| ||| ||||| ||| |
Sbjct 2140 TTCAAGTTCTTGACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTCAAACGTCTGC 2199
Query 77656 -CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714
|| | || ||||||| | || || || || ||||| || || |||||||| |
Sbjct 2200 TCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCG 2259
Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774
| ||| |||| | || || || || || || || | ||||| |||||||||||
Sbjct 2260 TGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 2319
Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834
|| ||||||||||| ||||| | ||| || || || || | || || || |||||
Sbjct 2320 TGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCT 2379
Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGC 77894
|||| || || ||||| | | ||| || | ||| || | || | ||| | |
Sbjct 2380 GTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGACCCTC 2439
Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954
| || | ||||| || || ||| |||||| || || ||||| || ||||
Sbjct 2440 CCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGC 2499
Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014
|| ||||| || || || ||||||| |||||||| | ||| |||| |||||
Sbjct 2500 CCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATG 2559
Query 78015 AAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073
|| || ||||| ||||| | || || || || |||| || ||| || || || |||||
Sbjct 2560 AACAGGTCAGGGATCCACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCC 2618
Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133
|| ||||| || || || || || || | | |||| | ||||| || ||||| || ||
Sbjct 2619 CGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACAT 2678
Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193
|| | | || |||| || || || ||||| || | ||| | || || || || ||
Sbjct 2679 GGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTA 2738
Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253
|||||||| ||| || | | ||||| || | || || || |||| ||| || || ||
Sbjct 2739 AACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCC 2798
Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313
||| | || || | || | || || ||||| || ||| || || || ||
Sbjct 2799 CGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGC 2858
Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373
||| | ||||| || |||||||| || || || ||||| || ||||| || | ||
Sbjct 2859 GCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAA 2918
Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433
||||| |||| || | | |||||||| || || | || ||||| || || ||
Sbjct 2919 GCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGT 2978
Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493
||||| || || || || || || || || || || ||| || || || || |||
Sbjct 2979 GAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCATG 3038
Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553
|| || || | || ||||| | ||| ||||| || | || || || |||||
Sbjct 3039 GATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTTAT 3098
Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613
||||||| ||| || |||| ||| || || ||||| ||||||| || || |||||
Sbjct 3099 CTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCT 3158
Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCA-TGACAG 78672
||| |||| || | || || || ||||||| | ||| || | | || | |
Sbjct 3159 GTCGAAAATTATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACGATGTTGAGTGTCTG 3218
Query 78673 TAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTT 78732
| || || || ||||| | | |||| || || | ||||| | | || |
Sbjct 3219 -CTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTACAGGTCCT 3277
Query 78733 CCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTG 78792
|||| || ||||| || | || || || || ||||| || || || ||||| || | |
Sbjct 3278 CCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGCGATCCGCG 3337
Query 78793 CAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTA 78852
|||| || || || || || || |||| || || |||||| | || ||||| || |
Sbjct 3338 CAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTCTGCAGCCA 3397
Query 78853 AAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGA 78912
| || | ||| | || ||||| ||| | || | || || || || ||||| | |
Sbjct 3398 GCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTTCATCGTAA 3457
Query 78913 TTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATG 78972
| | | | ||||| || || |||| ||| | ||| || || | || |||||||| |
Sbjct 3458 TCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGATACGAGAGG 3517
Query 78973 TGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008
|||||||||| || || ||| ||||| || |||||
Sbjct 3518 TGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553
Score = 102 bits (112), Expect = 1e-16
Identities = 125/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || ||||| |||||||| || |||||| || | || || || || || || |
Sbjct 1260 TCCAGCCATAGAAGTGCATGCTGGTTAGTTTGCCGTAGTTCGGCTCTGCGATGTGGATGT 1319
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
||| |||||| || || |||||||| | || | || || ||||| || || |||||||
Sbjct 1320 TCAGCGACTGGCTCTGGTCGATGAAGGTGCCGCGGTCGGCGGCCATCTTGATTATGGTCT 1379
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| || | |||||||||| ||||| | | || || | |||||||||||
Sbjct 1380 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGGAA 1430
>seq55784
Length=9571
Score = 89.7 bits (98), Expect = 7e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792
||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| |
Sbjct 2627 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 2686
Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851
||||| | |||||| || || || | || || |||||||| |||| || || || ||
Sbjct 2687 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTCTGTCTGAGACTCAATGAT 2745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693238711391520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |