Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq137229 464 9e-126 seq55784 89.7 7e-13 >seq137229 Length=11157 Score = 464 bits (514), Expect = 9e-126 Identities = 1282/1956 (66%), Gaps = 13/1956 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| | |||||||| || || | || ||||||||||| Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| |||||||| | || || || ||||| || || ||||| || ||||| Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | ||| || || | || || | ||| || || || || |||||| ||| | | Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || || || || || || | || || Sbjct 1843 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCT 1902 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || || || || || || | | || || || ||||| |||| || Sbjct 1903 TCGTACGTCTCGTAGGGGCCGAGCTCAG---CGGCCAGAATGCAGCTCGCCTCCAGAGCG 1959 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 |||| ||||| || || || |||| | || || || |||||| || ||||| Sbjct 1960 GCGTAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAAT 2019 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || ||| | | || || ||||||||||| || || || || ||||| || || || || Sbjct 2020 GGGTAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTG 2079 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | ||| ||||| | | ||||| || | |||||| | || | || || || || Sbjct 2080 TGGCGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTG 2139 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTTC 77655 || | || | || | |||||| |||| |||||| ||| ||||| ||| | Sbjct 2140 TTCAAGTTCTTGACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTCAAACGTCTGC 2199 Query 77656 -CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | || ||||||| | || || || || ||||| || || |||||||| | Sbjct 2200 TCAGGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCG 2259 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | ||| |||| | || || || || || || || | ||||| ||||||||||| Sbjct 2260 TGGCTGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 2319 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| ||||| | ||| || || || || | || || || ||||| Sbjct 2320 TGGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCT 2379 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGC 77894 |||| || || ||||| | | ||| || | ||| || | || | ||| | | Sbjct 2380 GTCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGACCCTC 2439 Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 | || | ||||| || || ||| |||||| || || ||||| || |||| Sbjct 2440 CCGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGC 2499 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || ||||| || || || ||||||| |||||||| | ||| |||| ||||| Sbjct 2500 CCGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATG 2559 Query 78015 AAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || || ||||| ||||| | || || || || |||| || ||| || || || ||||| Sbjct 2560 AACAGGTCAGGGATCCACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCC 2618 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 || ||||| || || || || || || | | |||| | ||||| || ||||| || || Sbjct 2619 CGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACAT 2678 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || |||| || || || ||||| || | ||| | || || || || || Sbjct 2679 GGCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTA 2738 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||||||| ||| || | | ||||| || | || || || |||| ||| || || || Sbjct 2739 AACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCC 2798 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 ||| | || || | || | || || ||||| || ||| || || || || Sbjct 2799 CGTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGC 2858 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 ||| | ||||| || |||||||| || || || ||||| || ||||| || | || Sbjct 2859 GCATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAA 2918 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||||| |||| || | | |||||||| || || | || ||||| || || || Sbjct 2919 GCAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGT 2978 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||||| || || || || || || || || || || ||| || || || || ||| Sbjct 2979 GAACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCATG 3038 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 || || || | || ||||| | ||| ||||| || | || || || ||||| Sbjct 3039 GATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTTAT 3098 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 ||||||| ||| || |||| ||| || || ||||| ||||||| || || ||||| Sbjct 3099 CTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCT 3158 Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCA-TGACAG 78672 ||| |||| || | || || || ||||||| | ||| || | | || | | Sbjct 3159 GTCGAAAATTATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACGATGTTGAGTGTCTG 3218 Query 78673 TAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTT 78732 | || || || ||||| | | |||| || || | ||||| | | || | Sbjct 3219 -CTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTACAGGTCCT 3277 Query 78733 CCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTG 78792 |||| || ||||| || | || || || || ||||| || || || ||||| || | | Sbjct 3278 CCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGCGATCCGCG 3337 Query 78793 CAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTA 78852 |||| || || || || || || |||| || || |||||| | || ||||| || | Sbjct 3338 CAGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTCTGCAGCCA 3397 Query 78853 AAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGA 78912 | || | ||| | || ||||| ||| | || | || || || || ||||| | | Sbjct 3398 GCGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTTCATCGTAA 3457 Query 78913 TTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACGAGATG 78972 | | | | ||||| || || |||| ||| | ||| || || | || |||||||| | Sbjct 3458 TCTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGATACGAGAGG 3517 Query 78973 TGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 |||||||||| || || ||| ||||| || ||||| Sbjct 3518 TGATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| || |||||| || | || || || || || || | Sbjct 1260 TCCAGCCATAGAAGTGCATGCTGGTTAGTTTGCCGTAGTTCGGCTCTGCGATGTGGATGT 1319 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||| || || |||||||| | || | || || ||||| || || ||||||| Sbjct 1320 TCAGCGACTGGCTCTGGTCGATGAAGGTGCCGCGGTCGGCGGCCATCTTGATTATGGTCT 1379 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||||| ||||| | | || || | ||||||||||| Sbjct 1380 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGGAA 1430 >seq55784 Length=9571 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| | Sbjct 2627 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 2686 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| || || || | || || |||||||| |||| || || || || Sbjct 2687 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTCTGTCTGAGACTCAATGAT 2745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693238711391520