Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq137229 470 2e-127 >seq137229 Length=11157 Score = 470 bits (520), Expect = 2e-127 Identities = 1283/1955 (66%), Gaps = 11/1955 (1%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| | |||||| || || || | || ||||||||||| Sbjct 1603 TTCTTCATCTCCTCGCTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTG 1662 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| |||||||| | || || || ||||| || || ||||| || ||||| Sbjct 1663 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGTTCG 1722 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 1723 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 1782 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | ||| || || | || || | ||| || || || || |||||| ||| | | Sbjct 1783 AGACTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGTTTCCAGTCCAACCGG 1842 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | || ||||| | ||||| || || || || ||||| | || || Sbjct 1843 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCT 1902 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | ||| || | || || ||| |||||||| | || || Sbjct 1903 TCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGAATGCAGCTCGCCTCCAGAGCGGCG 1962 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || ||||| || || || |||| | || || || |||||| | || ||||| || Sbjct 1963 TAGTAAATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCAGGGCTTTCAAATGGG 2022 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | || || || |||||||| | || || || ||||| || || || || || Sbjct 2023 TAACGCATGAGGATGAAGGCATCTGCCAAACCTTGTACACCAATTCCTATTGGCCTGTGG 2082 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| | || ||||| || | ||| || | || | || || || || || Sbjct 2083 CGCTTGTTGGACTTCTCTGCTTCAGGCACAGGATAGAAGTTTACTTCAATGATCTTGTTC 2142 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TTTTC-CA 76252 | || |||| | |||||| |||| |||||| ||| ||||| | | | || Sbjct 2143 AAGTTCTTGACGATTACTTTGGTCACGGATGCTAGTTTTTCAAAGTCAAACGTCTGCTCA 2202 Query 76253 TCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAG 76310 | || |||| || || || || || || ||||| || ||||||||||| | | | Sbjct 2203 GGGGTGACGTACATGTTGAGCGCGATTGAGGCCAGATTGCAGACGGCTACCTCGTCGTGG 2262 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||| |||| | || || ||||| || || || ||||||| || || ||||| | Sbjct 2263 C--TGGTGTATTCAACAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCT 2320 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | ||||||||||| ||| || | ||| || || || | | || || |||||||| Sbjct 2321 GGTGGTTGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTG 2380 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCT 76490 |||| || || ||||| | | ||| || | ||| || | | | ||| | | Sbjct 2381 TCTGGGACTCAATAATGGCATGCCACACCTGTTGAGCCTTCACCACACGCTTGACCCTCC 2440 Query 76491 TCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 || | ||||| || || | | |||||| || || ||||| || |||| | Sbjct 2441 CGTCCTTCTCATAGGAGGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCC 2500 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAA 76610 | || || || || |||||||||| ||||| || | ||| || | ||||| | Sbjct 2501 CGGGGCACTCGTTGGGACACATCAGAGACCAGTCTTGGTTGCCCTCTACTCTCTTCATGA 2560 Query 76611 AGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 | || ||||| ||||| | || || || || |||| || ||| | || || ||||| Sbjct 2561 ACAGGTCAGGGATCCACA-TGCCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCC 2619 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || ||||| || || || ||||| || | | |||| | ||||| || ||||| || || Sbjct 2620 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCTAGGTACATG 2679 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | || |||| || || || ||||| || | ||| | || || || || ||| Sbjct 2680 GCGAAGGCCCCGGGTCTCTTGTTCCCACCCTGGTCCACATAACGTGCCGTATTGTTGTAA 2739 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 ||||||| ||| || | | ||||| || | || || || |||| ||| || || || Sbjct 2740 ACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCC 2799 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 || | || || | | | || || ||||| || || ||||| || || Sbjct 2800 GTTGATCTGATGCAGCTGACGGCCACACCGATGCCTCCAGCTGACTTGGAGATGAGGGCG 2859 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || | ||||| ||||| |||||||| || || || || || ||||| || | || Sbjct 2860 CATTGCTTCAAGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAG 2919 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 ||||| |||| || | | |||||||| || || | |||||||| || || ||| Sbjct 2920 CAGCTGGACAGCTGTGGCCTATTGGTTCCTGCGTTGAAGAGCGTAGGAGAGGCGTGGGTG 2979 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGA 77089 ||||| || || || || || || || || || || ||||| || ||||| || ||| Sbjct 2980 AACCACTTCTCCGACAGCAGGTTATAAGTCTCGATGACTGCGTCAATATCATTTTCATGG 3039 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATT 77149 || || |||| || ||||| | ||| ||||| || || || | || ||||| Sbjct 3040 ATCCCAACAGACACTCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTTATC 3099 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 ||||||| ||| || |||| ||| || || ||||| ||||||| || || ||||| Sbjct 3100 TTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTG 3159 Query 77210 TCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA-TGACAGT 77268 ||| |||| || |||| || || ||| || | | ||| || | | || | | Sbjct 3160 TCGAAAATTATGGCCGAGTTGAGGCGGTCTTTGTTCTCAAGAACGATGTTGAGTGTCTG- 3218 Query 77269 GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTC 77328 | || || || ||||| | || |||| || || | ||||| | | ||| || Sbjct 3219 CTTGGAGATCATGGGAGAGTGCTGTCTATTTAATGGGTTGATGTAGTTGTACAGGTCCTC 3278 Query 77329 CATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGC 77388 ||| ||||| || || | || || || || ||||| || || || || || || | || Sbjct 3279 CATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTGGAGACAGCGATCCGCGC 3338 Query 77389 AGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAA 77448 ||| || || || ||||| || |||| || ||| ||||| | || ||||| || | Sbjct 3339 AGCGAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGAGTGGCGGTGATCTCTGCAGCCAG 3398 Query 77449 AGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 77508 || || | || | || || || || | || | || || || || ||||| | || Sbjct 3399 CGTGTCGAGCTCCACGGTGGTGACGCCACTGTACAAACCCTGGATCACCTTCATCGTAAT 3458 Query 77509 TTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGAGATGT 77568 | | ||||| || || || | ||| | || || || | || |||||||| || Sbjct 3459 CTGGGCCGGATCCACGAAGTCAGAGTTAAGTCCGTAGCACAGCTTCTGGATACGAGAGGT 3518 Query 77569 GATTTTATCAAACATGACATTCTCCTTACATCCAT 77603 ||||||||| ||||||||| ||||| | ||||| Sbjct 3519 GATTTTATCGAACATGACACGCTCCTGGCGTCCAT 3553 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| ||||||||| || |||| || || || || || | Sbjct 1260 TCCAGCCATAGAAGTGCATGCTGGTTAGTTTGCCGTAGTTCGGCTCTGCGATGTGGATGT 1319 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||| || || |||||||| | || | || || ||||| || || ||||||| Sbjct 1320 TCAGCGACTGGCTCTGGTCGATGAAGGTGCCGCGGTCGGCGGCCATCTTGATTATGGTCT 1379 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | |||||||||| ||||| | | || || | ||||||||||| Sbjct 1380 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGGAA 1430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711466708685760