Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq137696 179 5e-40
seq49656 150 3e-31
seq90121 113 6e-20
seq127709 89.7 7e-13
>seq137696
Length=6824
Score = 179 bits (198), Expect = 5e-40
Identities = 206/277 (74%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368
|||| |||||| | || || || ||| | || ||| | |||||||| ||| |||
Sbjct 5002 CCCTGGACGTTATTGCACACCAGCCTCTGCAGAGAGGCGGTGTTGACGATGTTGAAGCCC 4943
Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428
||| || ||||| ||||| |||||||||||| |||||||||||||| ||| ||||
Sbjct 4942 ACGCTGCCTCCGAATGTGCTCGGCTTCCAGTACTCCGGGGAGCAGATGGGGTTTCCCATT 4883
Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488
| ||| ||||||||| | || ||||||| ||| | ||| |||| || ||||| |||||
Sbjct 4882 AAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTCTCCCCAAAGATTGCGTTA 4823
Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548
| | |||||| |||||||| | || | ||| ||||||||||| ||||||| ||||||
Sbjct 4822 GACCTGGGCTTCTCCACCAACAGACCCGGGTAGAGCTCCACAGCGTCGACGTGTCCGTAG 4763
Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
| || |||| || || || || || |||||||
Sbjct 4762 AACTCCTCGAGTATTGCGGCCATTTCTTTCTCTCCTG 4726
Score = 96.9 bits (106), Expect = 5e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 9250 CGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCG 9309
|| ||||||||||| || ||||| ||| || || || | | |||| |||||
Sbjct 2966 CGTGTGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCCGGGTGGACCTCCTTCAACACATCA 2907
Query 9310 CACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGG 9369
||||| | |||||| || | |||||||| |||||||||||||| || || || || |||
Sbjct 2906 CACACTCGGTTGTGCTCTCGTAGCCAGATGGTGGCGTACATCATCAGACCGGGGACAAGG 2847
Query 9370 CCAAAAGCCTCTTGACCGACAGC 9392
||||| ||||| || || |||||
Sbjct 2846 CCAAACGCCTCGTGGCCCACAGC 2824
Score = 91.5 bits (100), Expect = 2e-13
Identities = 198/294 (67%), Gaps = 2/294 (1%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| || || || || || || || || ||||| || || | | ||||||||
Sbjct 3497 CTTACCCGTCCAGCAATCTGATTGGTAAATGATTCCACAAGGTTGCCGATGCCGTGCTCG 3438
Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063
||| || ||| ||||| |||| || | ||| || | | | | ||||| |
Sbjct 3437 GTGACTACGGAGGTGTTGAAGACAAACTCTTTATAGCTGTAATCTTTCTCCTCAATGTGG 3378
Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123
|| || ||||| |||| |||||||| ||||| |||| |||||||| || |||
Sbjct 3377 AAGCTGTCAGGCATCAGAGGGTGCCAGTGGTACAAGGTGTTGAACTCGGATGCAATGCGA 3318
Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182
|| ||||||||||| || | |||||||| ||||| | |||| |||| || |
Sbjct 3317 TTCTGGTACTGGAAGCGTTG-GTTGAAGAGCAGCTCGGGATCAAACTTGAGCTTGAAGTT 3259
Query 9183 GTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236
|||||||| || ||||| ||||| | | | | ||| |||||||| || ||
Sbjct 3258 ATAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 3205
>seq49656
Length=2153
Score = 150 bits (166), Expect = 3e-31
Identities = 182/248 (73%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||||| |||| |||| || || || || | ||| | | | |||||||| ||
Sbjct 376 GGACACCACTTGGTGTTGAGGCACACCAGCTTCTTCAGAGTGGAGGTTTTGACGATATCG 317
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| ||| ||||| || ||||||||||||||||||||| | |||||||||||| |||
Sbjct 316 AAACCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTT 257
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
|||| |||||||| |||||||| ||||| |||| ||| | || |||||||| || |
Sbjct 256 CCCATCAGGCCTTTCAGGGAGAAGGGAGCGCCCATCTCCACCATACTCTCACCAAATAGC 197
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
| | ||| ||| ||| |||| || || |||| ||| | ||||| ||| || | |||
Sbjct 196 TTGGTAGGATGGGTCTTCTCCAGCATGAGGCCGGGGTAGAACTCCAGAGCATCTATGTCA 137
Query 8543 CCGTAAAG 8550
|| || ||
Sbjct 136 CCATAGAG 129
>seq90121
Length=4062
Score = 113 bits (124), Expect = 6e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | || ||||| ||||||||||| || |||||||| ||| ||||||
Sbjct 1280 TCACCAATGACGACGAGTCTGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTCGGATGT 1221
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
||| ||||| || ||||| || |||||||| ||||| ||||| | ||||||||||
Sbjct 1220 TCTGCCTTCAGGACGTCGCAGACTCTGTTGTGCTCCCTCAGCCATAGGGTGGCGTACAAG 1161
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|||| || || | | ||| || |||| ||||| | ||||| ||| | | | |||
Sbjct 1160 GTGAGGCCCGGCAGGATGCCGAACACCTCCTGACCAATGGCCAGCCGCTTTTCTGGGGGG 1101
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTC 9446
|| | |||||| | ||||||||| |||| ||
Sbjct 1100 ACGTTTTCAGGATACACCATGTGCACAGGGACCTC 1066
>seq127709
Length=23497
Score = 89.7 bits (98), Expect = 7e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434
|| || |||||||||||||||||||| |||| || || || ||| ||| |||||||
Sbjct 19441 CCCCCAAAGGTGCTGGGCTTCCAGTAAACCGGAGAACAAATAGGGTTTCCCAGGAGGCCT 19500
Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGG 8483
|| |||||||| || || |||| ||| | |||||||| || || ||||
Sbjct 19501 TTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAAAATGG 19549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715400992614720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |