Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq137696 179 5e-40 seq49656 150 3e-31 seq90121 113 6e-20 seq127709 89.7 7e-13 >seq137696 Length=6824 Score = 179 bits (198), Expect = 5e-40 Identities = 206/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| |||||| | || || || ||| | || ||| | |||||||| ||| ||| Sbjct 5002 CCCTGGACGTTATTGCACACCAGCCTCTGCAGAGAGGCGGTGTTGACGATGTTGAAGCCC 4943 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| ||||| |||||||||||| |||||||||||||| ||| |||| Sbjct 4942 ACGCTGCCTCCGAATGTGCTCGGCTTCCAGTACTCCGGGGAGCAGATGGGGTTTCCCATT 4883 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | ||| ||||||||| | || ||||||| ||| | ||| |||| || ||||| ||||| Sbjct 4882 AAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTCTCCCCAAAGATTGCGTTA 4823 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | | |||||| |||||||| | || | ||| ||||||||||| ||||||| |||||| Sbjct 4822 GACCTGGGCTTCTCCACCAACAGACCCGGGTAGAGCTCCACAGCGTCGACGTGTCCGTAG 4763 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || |||| || || || || || ||||||| Sbjct 4762 AACTCCTCGAGTATTGCGGCCATTTCTTTCTCTCCTG 4726 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 9250 CGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCG 9309 || ||||||||||| || ||||| ||| || || || | | |||| ||||| Sbjct 2966 CGTGTGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCCGGGTGGACCTCCTTCAACACATCA 2907 Query 9310 CACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGG 9369 ||||| | |||||| || | |||||||| |||||||||||||| || || || || ||| Sbjct 2906 CACACTCGGTTGTGCTCTCGTAGCCAGATGGTGGCGTACATCATCAGACCGGGGACAAGG 2847 Query 9370 CCAAAAGCCTCTTGACCGACAGC 9392 ||||| ||||| || || ||||| Sbjct 2846 CCAAACGCCTCGTGGCCCACAGC 2824 Score = 91.5 bits (100), Expect = 2e-13 Identities = 198/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || || || || || || ||||| || || | | |||||||| Sbjct 3497 CTTACCCGTCCAGCAATCTGATTGGTAAATGATTCCACAAGGTTGCCGATGCCGTGCTCG 3438 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTCA 9063 ||| || ||| ||||| |||| || | ||| || | | | | ||||| | Sbjct 3437 GTGACTACGGAGGTGTTGAAGACAAACTCTTTATAGCTGTAATCTTTCTCCTCAATGTGG 3378 Query 9064 AATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9123 || || ||||| |||| |||||||| ||||| |||| |||||||| || ||| Sbjct 3377 AAGCTGTCAGGCATCAGAGGGTGCCAGTGGTACAAGGTGTTGAACTCGGATGCAATGCGA 3318 Query 9124 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATG 9182 || ||||||||||| || | |||||||| ||||| | |||| |||| || | Sbjct 3317 TTCTGGTACTGGAAGCGTTG-GTTGAAGAGCAGCTCGGGATCAAACTTGAGCTTGAAGTT 3259 Query 9183 GTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 |||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 3258 ATAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 3205 >seq49656 Length=2153 Score = 150 bits (166), Expect = 3e-31 Identities = 182/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| || || || || | ||| | | | |||||||| || Sbjct 376 GGACACCACTTGGTGTTGAGGCACACCAGCTTCTTCAGAGTGGAGGTTTTGACGATATCG 317 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| ||||| || ||||||||||||||||||||| | |||||||||||| ||| Sbjct 316 AAACCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTT 257 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| |||||||| |||||||| ||||| |||| ||| | || |||||||| || | Sbjct 256 CCCATCAGGCCTTTCAGGGAGAAGGGAGCGCCCATCTCCACCATACTCTCACCAAATAGC 197 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | | ||| ||| ||| |||| || || |||| ||| | ||||| ||| || | ||| Sbjct 196 TTGGTAGGATGGGTCTTCTCCAGCATGAGGCCGGGGTAGAACTCCAGAGCATCTATGTCA 137 Query 8543 CCGTAAAG 8550 || || || Sbjct 136 CCATAGAG 129 >seq90121 Length=4062 Score = 113 bits (124), Expect = 6e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | || ||||| ||||||||||| || |||||||| ||| |||||| Sbjct 1280 TCACCAATGACGACGAGTCTGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTCGGATGT 1221 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| || ||||| || |||||||| ||||| ||||| | |||||||||| Sbjct 1220 TCTGCCTTCAGGACGTCGCAGACTCTGTTGTGCTCCCTCAGCCATAGGGTGGCGTACAAG 1161 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| || || | | ||| || |||| ||||| | ||||| ||| | | | ||| Sbjct 1160 GTGAGGCCCGGCAGGATGCCGAACACCTCCTGACCAATGGCCAGCCGCTTTTCTGGGGGG 1101 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTC 9446 || | |||||| | ||||||||| |||| || Sbjct 1100 ACGTTTTCAGGATACACCATGTGCACAGGGACCTC 1066 >seq127709 Length=23497 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || |||||||||||||||||||| |||| || || || ||| ||| ||||||| Sbjct 19441 CCCCCAAAGGTGCTGGGCTTCCAGTAAACCGGAGAACAAATAGGGTTTCCCAGGAGGCCT 19500 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGG 8483 || |||||||| || || |||| ||| | |||||||| || || |||| Sbjct 19501 TTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAAAATGG 19549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715400992614720