Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 542 3e-149 seq7 96.9 4e-15 seq19 89.7 6e-13 >seq4 Length=20010643 Score = 542 bits (600), Expect = 3e-149 Identities = 1293/1946 (66%), Gaps = 23/1946 (1%) Strand=Plus/Plus Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 53145 |||||| || || || |||| | | |||||| || | || | || ||||| || || Sbjct 16959824 ATTCTTCATTTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTT 16959883 Query 53146 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 53205 || | || || |||||||||| ||||| || ||||| || || ||||| || || || Sbjct 16959884 CACGATCTGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTC 16959943 Query 53206 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 53265 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 16959944 GATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCAG 16960003 Query 53266 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 53325 | ||| || || | || | | | ||| || || || || | |||| | ||| || Sbjct 16960004 CAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCCCAGTCCCACAG 16960063 Query 53326 ATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGAT 53383 || | || | | | || || || || || ||| | || Sbjct 16960064 GTCTGTGGG--CGTCTTCTCCCACATGTCGTACTGAAGGATGCCCTTGCTGACTGGAGAC 16960121 Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || || || || || || |||| || || || || ||||||| || Sbjct 16960122 CCTTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCAGCTGGCCTCTAGGGCG 16960181 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 |||| || ||||| |||||||| | | || || || ||||| |||| ||||| Sbjct 16960182 GCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGGGCTTTCAAAA 16960241 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 || || | || || || |||||||| | || || |||||||| || || || || Sbjct 16960242 GGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTGGCCTG 16960301 Query 53564 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 || | ||| || ||| ||||||| || || | |||||| || || || ||||| || || Sbjct 16960302 TGGCGCTTGTTGGAGTTTTCAGCCTCGGGCACAGGATAGTAGTTGATGTCTATGATCTTG 16960361 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA 53683 || || |||||||| || || ||| ||| | |||||||| || ||| | |||| Sbjct 16960362 TTCAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATAA-GTCCG 16960420 Query 53684 -TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 ||| | || ||||||| | || || || ||||||||||||||||| ||||| | Sbjct 16960421 CTCTGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAAACGGCCACCTCGTC 16960480 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 | | || | | || || ||||| || || || ||||||||||| || | || Sbjct 16960481 TGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTT 16960540 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 || || || ||||| |||| || || || || || || ||| | |||||||| ||||| Sbjct 16960541 CTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTACCGGTTTC 16960600 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919 |||| || || || || || | ||| | ||||||| | | || || Sbjct 16960601 TGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGCTTCACCCT 16960660 Query 53920 CTTTTCTCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC 53977 | ||| | || || ||||||| | | || |||| || ||||| | |||| Sbjct 16960661 CCCTTCCTTCTCATACCTAGTGTAGAGCTCC--TCGAACTTCTCCCCCCAGCACTCGTCC 16960718 Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTCGTT 54035 | || ||||| ||| |||||||| | ||||| || || | ||| ||| | | Sbjct 16960719 AGACCGGGACACTCACTGGGACACATGAGTGACCAGTCCTGGT--TGCTTTCCACCCTCT 16960776 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095 |||| || || ||||| ||||| | || || ||||||| | ||| || ||||| | Sbjct 16960777 TCATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTCCT 16960836 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 | ||||| ||||| |||||||| ||||| | | | ||| ||||||| || ||||||| Sbjct 16960837 TCCCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGGCTCCAAGT 16960896 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | |||| | ||||||| || ||||| || |||||||| | ||| | || ||||| | Sbjct 16960897 AAATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCACGTAGCGCGCTGTGTTGT 16960956 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 |||| ||||||| ||| || | | || || || || |||||||| | ||| |||| Sbjct 16960957 TATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTAGC 16961016 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 | ||| ||| | || |||| | | ||| || || || ||| || ||||| | Sbjct 16961017 TCCCAGTGGATCTGATGCAGCTAACGGCCACACCGATGCCGCCGGCCGACTTGGAGATGA 16961076 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 ||||| || | ||| ||||||||||| || || || || ||| ||||| || | Sbjct 16961077 GGGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAGCA 16961136 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | || ||||| |||| ||| | || | ||||| || || || | || || || |||| Sbjct 16961137 GGAAGCAGCTGGACAGCTGGGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGCGT 16961196 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || ||||| || || || || || ||||| || | ||| || | ||| ||||| | Sbjct 16961197 GGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTATTGATGGCGGCGTCGATATCATTCT 16961256 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 || || || || | || ||||| | ||||||||| || | || | | ||| || Sbjct 16961257 TGTGGATACCAACAGACACCCGCATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCCGT 16961316 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | || ||||||| |||||| | |||| ||| || || ||||| ||||||| || |||| Sbjct 16961317 TGATCTTCAGCAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGT 16961376 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 54695 ||| |||||||| || | ||||| || || || | | || || |||| | Sbjct 16961377 CTCTGTCGTAAATGATGGCCGAGTTCAGGCGGTCTTTGTTCTCCAGAATTATGTCCAGAG 16961436 Query 54696 TAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTGACATAGTTAAATA 54752 | | ||| || || || || || || | | || | || ||||||||||| | | Sbjct 16961437 T-CTCCTTGGAGATCATGGGGGA--GTGACGTTTGTTCAGGGGGTTGACATAGTTGTACA 16961493 Query 54753 AATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 54812 || | |||||||||| | || | || || || || ||||| || || || || || | Sbjct 16961494 GGTCTTCCATCACTTCATTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACAGCGA 16961553 Query 54813 TTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 54872 | | || || || |||||||| || || |||| || || ||||| | || || | Sbjct 16961554 TGCGTGCAGCCAGGATGGCATAGTCGGGGTGTTTGGTTGTGAGGGTGGCAGTGATCTCTG 16961613 Query 54873 CTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 | | ||| ||||||| || || || || |||||||| || | || ||||| ||||||| Sbjct 16961614 CGGCCAGTGTGTCCAGCTCAACTGTGGTCACTCCATTGTACAGACCCTGGATCACCTTCA 16961673 Query 54933 TAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATAC 54992 | | || | ||||| | |||| ||| | |||||| || | || |||| Sbjct 16961674 TGGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGGCCATAGCAGAGCTTCTGGATAC 16961733 Query 54993 GAGATGTGATTTTATCAAACATGACA 55018 |||| |||||||| |||||||||||| Sbjct 16961734 GAGAGGTGATTTTGTCAAACATGACA 16961759 >seq7 Length=13814722 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | || ||||| || || | |||||||| ||||||||||| | Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || |||| || || || ||||| ||||||||||| || ||||| ||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCACTGCAGCAAAGG 13788558 Query 24277 C 24277 | Sbjct 13788557 C 13788557 >seq19 Length=17744385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 || || | ||| || || ||||| || || || || || ||||||| || ||||||||| Sbjct 13832062 CTGAAAACTTTCTTGGTCTCTTTATGCAGGTTGGACACAGCTATTCGTGCAGCTAGAATG 13832003 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAAT 54889 || || || ||||||| || || ||||||||| | || |||| |||| |||| | Sbjct 13832002 GCGTAGTCTGGATGTTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAACATCCAGT 13831943 Query 54890 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || || ||| | || | || || || |||||||| Sbjct 13831942 TCCACAGTGGTGACCCCACTGTAAAGACCCTGAATCACCTTCAT 13831899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593501603882640