Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq19 134 1e-26 seq14 132 4e-26 >seq19 Length=17744385 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||||||||| | || || || | ||||||||||||||||| Sbjct 2914325 GTGGACTCCTTCTGGATGTTATAGTCAGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCT 2914384 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || |||||||||||||| || | ||| |||||||| |||||| |||| Sbjct 2914385 GCAAATATGAGTCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTC 2914444 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||||| |||| ||| ||||||||||| |||| || Sbjct 2914445 ACGTTCTCTATTGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTTAGGGTC 2914504 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 2914505 TTGACAAACATCTGCAT 2914521 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | |||||| | ||| |||||||||||||| || ||||| ||||| | Sbjct 2912611 TTCCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGG 2912670 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || || | || |||| ||| || || ||| | || |||||||||||||| | Sbjct 2912671 ACAGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTG 2912730 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| || | | | | || |||| |||||| Sbjct 2912731 GGATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAA 2912790 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| ||||| ||||| || | ||||| ||||| || ||||| |||| Sbjct 2912791 CCTCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCATCTTGA 2912844 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | ||||| || | || |||||||| ||||| Sbjct 3999174 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 3999115 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | ||| |||||||| ||||||| || Sbjct 3999114 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTT 3999055 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| ||| | ||||||||||||||| || | ||| Sbjct 3999054 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTT 3998995 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 3998994 TTGACAAAGATCTGCAT 3998978 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | ||||| || | || |||||||||||||| Sbjct 3993669 GTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 3993610 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| ||| || ||| Sbjct 3993609 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTC 3993550 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| || | ||||||||||||||| || | ||| Sbjct 3993549 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTT 3993490 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 3993489 TTGACGAAGATCTGCAT 3993473 Score = 111 bits (122), Expect = 1e-19 Identities = 167/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 20942 CCCGT-TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTAT 21000 ||||| |||| || || || | ||||| | ||| | |||||||||||| || ||||| | Sbjct 2912377 CCCGTATTCCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGT 2912436 Query 21001 AGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGT 21060 |||| | || || | | ||||||||||| || || ||| | || || | |||||||| Sbjct 2912437 AGTCAGAGAGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGT 2912496 Query 21061 CCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGG 21120 | || | ||| || ||||| |||||| |||||| | | | || || | || Sbjct 2912497 CTGGTGGGATGCCCTCTTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGG 2912556 Query 21121 GCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 | || ||||| ||| ||||||||||| || | ||||| ||||| | |||||| Sbjct 2912557 GTTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCATT 2912612 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | |||| || | || |||||||||||||| Sbjct 3993441 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCATCTTCCAGCTGTTTGCCA 3993382 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || || ||||| || ||| | |||||||||||| ||||||| ||| Sbjct 3993381 GCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTC 3993322 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||| |||| ||||| || | ||| ||||||||||| || | || Sbjct 3993321 ACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 3993262 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| || |||||| Sbjct 3993261 TTTACAAAGATCTGCATT 3993244 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | |||| || | || |||||||| ||||| Sbjct 3999402 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGAGCGGCCATCTTCCAGCTGCTTGCCA 3999343 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| ||| || || Sbjct 3999342 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTT 3999283 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || |||| |||||| ||| | ||||||||||||||| || | ||| Sbjct 3999282 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTT 3999223 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 3999222 TTGACGAAGATCTGCAT 3999206 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||| | || || | ||| | |||||||||||| || ||||| ||||| | Sbjct 2910121 TTCCACCCCTCAGACGCAGAACGAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2910180 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | ||||| ||||||||||| ||| | || || | ||||||||| | Sbjct 2910181 AGAGAGTGCGACCATCCTCTAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAG 2910240 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||| || || ||| || ||| | | | | || |||| ||||||| Sbjct 2910241 GAATGCCTTCTTTATCCTGGATTTTAGCTTTGATATTTTCAATTGTGTCACTAGGCTCCG 2910300 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| || | ||||||||||| || ||||| Sbjct 2910301 CCTCCAGAGTGATAGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 2910349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | |||||| || | || |||||||||||||| Sbjct 3994197 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 3994138 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| | || || |||||||| || ||| | |||||||||||| Sbjct 3994137 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 3994094 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 || |||||||||||||| ||| | || || |||||||| || ||| | |||||||||| Sbjct 3994383 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 3994324 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || ||| || || || | | | || |||| |||||| || | ||||||| Sbjct 3994323 TCTTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATG 3994264 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| || | |||||||| || || ||||| Sbjct 3994263 GTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3994229 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || ||||| ||||| ||||| | ||| || | | || |||||||| || || Sbjct 3998946 GTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTGCTTTCCA 3998887 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || ||| | |||||||||||| ||| || || Sbjct 3998886 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTT 3998827 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || | | | || |||| |||||| ||| | ||||||||||||||| || Sbjct 3998826 ACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGT 3998774 >seq14 Length=28847931 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||||||||||| ||| | ||| || | ||| | ||||||||||| || ||||| ||||| Sbjct 12556695 GTTTCCCCCTCTCAGACGGAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 12556754 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||||| || | || |||| |||||| || ||| | || || | ||||||||| Sbjct 12556755 AGAAAGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGG 12556814 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||||| || || |||||| || || | | | ||||||| |||||| Sbjct 12556815 GGGGATACCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTC 12556874 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTT 21177 | ||||| || ||||||||||| || | || || ||||| |||||||||| Sbjct 12556875 CACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATTT 12556927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| | ||| | ||| || | ||| | | ||| ||||| || ||||| ||||| | Sbjct 12557155 CCCCCCCTCAGACGGAGAACAAGATGGAGGGGGGATTCCTTCTGGATGTTGTAGTCAGAA 12557214 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || || || || || || ||| | || || | |||||| || ||| Sbjct 12557215 AGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAAGATCAGACGCTGCTGATCTGGGGGG 12557274 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| || || | |||| || || | | | ||||||||||||||| | Sbjct 12557275 ATACCTTCTTTATCCTGGTTCTTGGCCTTGACATTTTCAATGGTATCACCGGGCTCCACT 12557334 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || ||||| |||||||| Sbjct 12557335 TCCAGAGTGATGGTCTTGCCAGTCGGGTTCTTCACAAAGATTTGCAT 12557381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422106648703388