Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3 114 9e-21 >seq3 Length=16251686 Score = 114 bits (126), Expect = 9e-21 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || || || ||||| |||||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 14876095 TACTCGGCACCAAAGTGCCTCCACTGGAAACCGTACACGGGTCCCAGGTCGCCTTCTTCT 14876154 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 || || |||||||||||| || | | | | | ||||||||| || ||||| || | | Sbjct 14876155 CTGTCTGTGAAACCAAGCTTGTCCAGAAACGCACGAGATCCATTGGCGTCCCAGATTTTC 14876214 Query 97522 ACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGAT-CCTCTGATAAAC---CACAACA 97576 || || ||| |||||||||| || || ||| ||| |||||||| ||||||| Sbjct 14876215 ACCCCCTTCTCTGAAAGCTCTTTGGCGTTTGTTGATCCCTGTGATAAACACACACAACA 14876273 Score = 95.1 bits (104), Expect = 8e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| ||||||||||| | || | || | ||||| || ||||| || || || || Sbjct 14874784 GTGATGTGGGCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAGGGAACTCCC 14874843 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || ||||| |||||||| | || || | ||||||||| |||| ||||||||||| || Sbjct 14874844 AGCCCCATGTCAGCTGAGCGCTGGTACAGCTGACAGGAGAGCTCGCCATCACACACGTAG 14874903 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||||| | | ||||| || |||| ||||| Sbjct 14874904 AACTGACAGATGGCGTGACATGGCGGCAGGGCCAT 14874938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346658715935510