Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 125 6e-24 seq19 113 4e-20 >seq4 Length=20010643 Score = 125 bits (138), Expect = 6e-24 Identities = 453/693 (65%), Gaps = 32/693 (5%) Strand=Plus/Plus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| | || |||| || ||||||||||| || ||||| || || | || ||||||||| Sbjct 16959933 GTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATG 16959992 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || || | ||| || || || | ||| || || || || | | Sbjct 16959993 GGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCC 16960052 Query 133395 CAGTCCCACAGAT-TGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATG 133453 ||||||||||| | ||| || || | ||||| | | | || || | || Sbjct 16960053 CAGTCCCACAGGTCTGTGGG---------CGTC-TTCTC--CCACAT-GTCGT---ACTG 16960096 Query 133454 CAAAATACCCCTGCTCACCGGACTGTCCGT--GTACGATTCATAGGGTCCGTTGATTTTG 133511 | || ||| |||| || ||| | || | ||||| |||||||| || | | || Sbjct 16960097 AAGGATGCCCTTGCTGACTGGA--GACCCTTCGTACGTCTCATAGGGGCCCA--ACTCTG 16960152 Query 133512 --GCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAATAG 133568 |||||||||||||| ||||| | ||||| |||| ||||| || |||| | || | Sbjct 16960153 CAGCCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGAT-G 16960211 Query 133569 TTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGC 133627 |||| | | ||| || || ||| || | | || | || | || ||||| || Sbjct 16960212 TTGA-GCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGC 16960270 Query 133628 CAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGC 133687 || |||||| | || | || || || | || || ||| | || | ||||| Sbjct 16960271 CAGACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGG 16960330 Query 133688 CGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAA 133747 | ||||||| ||||| ||| ||||||||||| ||||| | |||||| | || |||| Sbjct 16960331 CACAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCAC 16960390 Query 133748 ATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGC 133807 ||| |||| ||||| | ||| || | || |||| || |||||| || Sbjct 16960391 CTGTGTCAGTTTGTTGAAGTCATAAGTCC--GCTCTGGGGT-GACGTACATGTTGAGAGC 16960447 Query 133808 AATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGC 133867 || || ||||||||||||||| ||||| | | |||| ||||| || | Sbjct 16960448 GATGGACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGT 16960507 Query 133868 GCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATG 133927 ||| ||||||||||| ||||||||||||| || | || ||||| | ||||| Sbjct 16960508 GCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGC 16960567 Query 133928 ATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 || ||||| |||||||| ||| |||||||| Sbjct 16960568 GTCTTTGTAGAGCATGTAGGGCGTACCGGTTTC 16960600 >seq19 Length=17744385 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | |||||| |||||| |||||||| ||| Sbjct 2910153 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCTAGCTGTTTGCCA 2910212 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||||||||||||||| || ||||| ||||| || || || ||||| ||| Sbjct 2910213 GCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCTTTATCCTGGATTTTAGCTTTG 2910272 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 | | ||| | ||||| | ||| |||| | || | || ||||| ||||| ||| Sbjct 2910273 ATATTTTCAATTGTGTCACTAGGCTCCGCCTCCAGAGTGATAGTCTTGCCAGTCAGGGTT 2910332 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 2910333 TTGACAAAGATCTGCAT 2910349 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | |||||| |||||| ||||| |||||| Sbjct 2912415 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCCAGCTGCTTTCCA 2912474 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||||||||||||||| || || || |||||||| ||||| || || ||| Sbjct 2912475 GCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGGATCTTGGCTTTC 2912534 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || || || || | ||| | || ||||| ||||| ||| Sbjct 2912535 ACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 2912594 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| | |||||| Sbjct 2912595 TTCACAAACACCTGCAT 2912611 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| |||||||| |||||||| ||| || ||| || ||| || ||||| |||||| Sbjct 3998946 GTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTGCTTTCCA 3998887 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | ||||||||| || || ||||| |||||||| ||||| || Sbjct 3998886 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTT 3998827 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG-- 118719 || | ||| | |||||| || ||| || || | ||| | || ||||| || || | Sbjct 3998826 ACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGTGAG 3998767 Query 118720 --TTTTTACAAAAATCTGCATGGCT 118742 | || ||||||||||||||| || Sbjct 3998766 GGTCTTCACAAAAATCTGCATGACT 3998742 Score = 107 bits (118), Expect = 2e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || |||||||| || |||||||| || | ||||| ||| || | Sbjct 3999185 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 3999126 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | ||||||||| || || |||||||||||||| | Sbjct 3999125 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGA 3999066 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | |||||| || ||| || || | ||| | || |||| Sbjct 3999065 TCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGC 3999006 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || ||||| ||||| ||||||||| Sbjct 3999005 CAGTGAGGGTTTTGACAAAGATCTGCATG 3998977 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || ||||| || || | |||||| |||||| | Sbjct 2914314 CAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGAGTGCGGCCATCCTCCA 2914373 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || || | ||||| | |||||| || ||||| |||||||||||||| | Sbjct 2914374 GCTGTTTGCCTGCAAATATGAGTCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGA 2914433 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || ||| || | || | ||||| || ||||||||| | ||| | || |||| Sbjct 2914434 TCTTGGATTTCACGTTCTCTATTGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGC 2914493 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || ||||| |||||||| Sbjct 2914494 CAGTTAGGGTCTTGACAAACATCTGCAT 2914521 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || |||||| ||| || | ||| || ||| Sbjct 2912643 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCCAACTGCTTACCA 2912702 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| || || || || ||||||||||| || || || Sbjct 2912703 GCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTT 2912762 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 | | || | ||||| || ||| ||||| | ||| | |||||||| ||||| ||| Sbjct 2912763 ATATTCTCTATCGTGTCACTGGGCTCAACCTCCAGGGTGATGGTTTTGCCAGTCAGGGTT 2912822 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 2912823 TTCACAAACATCTGCAT 2912839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || |||||||| || |||||||| || | | ||| ||| || | Sbjct 3993452 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCATCTTCCA 3993393 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| ||||| |||| || | ||||||||||| || ||||| |||||||| | Sbjct 3993392 GCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 3993333 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| || || | || | ||||| | ||| ||||| | ||| | || |||| Sbjct 3993332 TCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGC 3993273 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || |||||||| |||||||| Sbjct 3993272 CAGTGAGGGTCTTTACAAAGATCTGCAT 3993245 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || | || || || ||| || || || || || Sbjct 2910609 GTGGACTCTTTCTGGATGTTGTAGTCACACAGGGTTCGATCATCTTCCAGTTGCTTAGCA 2910668 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | ||||||||||||||||| |||| || ||||||||||| ||||| ||| Sbjct 2910669 GCAAAAATGAGACGCTGCTGATCTGGAGAGATTCCCTCCTTGTCCTGGATTTTAGATTTT 2910728 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | | || |||| | ||| ||||| | || | || || |||||||| || Sbjct 2910729 ACATTCTTGAAACTGTCACTTGGCTCAACCTCCAATGTTATGGTCTTCCCGGTCAGGGTC 2910788 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 2910789 TTAACAAACATCTGCAT 2910805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433673668328956