Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq19 138 7e-28 seq14 84.2 1e-11 >seq19 Length=17744385 Score = 138 bits (152), Expect = 7e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | ||||| || |||||||| || ||||| |||||||||||||| Sbjct 2912612 TCCTCCTCTCAGACGGAGCACGAGATGTAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 2912671 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || ||||||||||| || || || ||||| | ||||||||| || Sbjct 2912672 CAGAGTGCGGCCATCTTCCAACTGCTTACCAGCAAAGATGAGTCTCTGCTGGTCTGGTGG 2912731 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||||| || |||||| || | | || || Sbjct 2912732 GATTCCCTCCTTGTCCTGGATCTTGGACTTTATATTCTCTATCGTGTCACTGGGCTCAAC 2912791 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||||||||| || || ||||||||||| ||||||||| Sbjct 2912792 CTCCAGGGTGATGGTTTTGCCAGTCAGGGTTTTCACAAACATCTGCATC 2912840 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 3999168 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3999109 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||| || ||| | || ||||||||| |||||| ||||| || Sbjct 3999108 ATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTTACATTC 3999049 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || || | || ||||| ||||| ||||| ||||| ||| Sbjct 3999048 TCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACA 3998989 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3998988 AAGATCTGCAT 3998978 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || | ||| | || |||| ||| ||||| || || Sbjct 3993435 TCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 3993376 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||| ||| ||| | || |||||||| |||||| ||| | || Sbjct 3993375 ATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 3993316 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || || | |||||||| ||||| ||||| || || ||| Sbjct 3993315 TCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACA 3993256 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3993255 AAGATCTGCAT 3993245 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||| || |||| ||| || ||||| ||||||||||| || Sbjct 2912384 TCCTCCCCGAAGGCGAAGCACAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2912443 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || |||| |||||| || || || ||||| ||||||||||| || Sbjct 2912444 GAGAGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 2912503 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||| ||||| ||| || ||||| | | | || | ||| | | ||| | Sbjct 2912504 GATGCCCTCTTTGTCCTGGATC-TTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAA 2912562 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| ||||| || || ||||||||||| | |||||| Sbjct 2912563 CTTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAACACCTGCAT 2912611 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 3999396 TCTTTCTGGATGTTGTAGTCAGAAAGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 3999337 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| |||||| || ||| | || |||||||| || ||||| ||||| || Sbjct 3999336 ATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTTACAT 3999279 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || || | || ||||| ||||| ||||| ||||| | Sbjct 3999278 TCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGA 3999219 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 3999218 CGAAGATCTGCAT 3999206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| ||||||||||| || || || | | Sbjct 2910366 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCACCT 2910425 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || || || ||||| ||||||||||| ||| | | || || || Sbjct 2910426 TCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATCCCTTCTTTATC- 2910484 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | | |||| | ||| | | ||| || |||| ||||| | Sbjct 2910485 -CTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACCTCCAGGGTGATTG 2910543 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| || || || ||||| ||||||||||| Sbjct 2910544 TTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| || || ||| | || |||| ||| ||||| || || Sbjct 3993664 TTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAA 3993605 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 || |||| |||||| || ||| | || |||||||| || ||||| ||| | | Sbjct 3993604 GATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTCACA 3993547 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | || | || | | || || || | || ||||| ||||| ||||| ||||| Sbjct 3993546 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTG 3993487 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 3993486 ACGAAGATCTGCAT 3993473 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| || || || | ||| |||||| || ||||||||||||||||| ||| | || Sbjct 3998962 CAGGACAAGATGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATC 3998903 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || || || |||| |||||| || ||| | || |||||||| Sbjct 3998902 TTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 3998843 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || || ||||| || | || | || | | || || || | || ||||| Sbjct 3998842 CTGGATTTTAGCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGT 3998783 Query 34357 TTTGCC----GGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || |||||||| |||||||| Sbjct 3998782 CTTGCCAGTGAGTGAGGGTCTTCACAAAAATCTGCAT 3998746 >seq14 Length=28847931 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||||||| || || || || Sbjct 12556735 TCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAACTGTTTACCAGCAAAG 12556794 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| ||| | | || || || ||||| ||| | || Sbjct 12556795 ATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATCTTGGCCTTGACATTT 12556854 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || |||||| Sbjct 12556855 TCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 12556914 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 12556915 AAGATTTGCAT 12556925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322955282466080