Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq6 233 1e-56 >seq6 Length=18840743 Score = 233 bits (258), Expect = 1e-56 Identities = 289/391 (74%), Gaps = 6/391 (2%) Strand=Plus/Minus Query 107693 GAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGA 107752 ||||||||| ||| ||||||||||| || || || || ||| ||||||| || || || Sbjct 8841242 GAGTAAAGAGGAGAAGGACTTCCCCATCGCTTATTCCATAGTGATCCATGAAAAAATCGA 8841183 Query 107753 AAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812 | ||||| || || |||||| || | || || ||||||||| | |||||||| || || Sbjct 8841182 GATGTTTGAGCGACTTCTGCGATCCATCTACGCTCCTCAGAACGTCTACTGTGTGCATGT 8841123 Query 107813 GGATGTGAAGTCCCCAGAG-ACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCC 107871 ||| |||||| || ||| | ||||| | |||| || ||| ||| || |||| || | Sbjct 8841122 GGACCAGAAGTCGCCGGAGGAATTTCACA-AGGCCGTGGCGGCGATTGTTGCCTGTTTTC 8841064 Query 107872 CCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGC 107931 |||| || ||||| ||||||||||| | || || || || || ||| || |||| | Sbjct 8841063 CCAACGTGTTCATCGCCAGTAAGTTAGAAAACGTCGTGTACGCGTCTTGGACCCGAGTCC 8841004 Query 107932 AAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGTACTT 107989 ||||||| |||||||| ||||| || |||| || ||| | || |||||||| | Sbjct 8841003 AAGCTGATCTGAACTGCATGGAGGATCTGCT--GAAGTCCAGCGTCAAGTGGAAGTATCT 8840946 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||||| || || || |||||||| ||||| || ||||| | ||| || || | ||| || Sbjct 8840945 GCTGAACACCTGTGGCACAGACTTTCCCATTAAAACCAACGGCGAAATCGTACAGGCACT 8840886 Query 108050 CAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 |||| ||||| || | |||||| |||||| Sbjct 8840885 GAAGACCTTGAATGGGAGGAACAGCATGGAG 8840855 Score = 226 bits (250), Expect = 2e-54 Identities = 291/397 (73%), Gaps = 6/397 (2%) Strand=Plus/Minus Query 107693 GAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGA 107752 ||||||||| ||| ||||||||||| || || || || ||| ||||||| || || || Sbjct 8844547 GAGTAAAGAGGAGAAGGACTTCCCCATCGCTTATTCCATAGTGATCCATGAAAAAATCGA 8844488 Query 107753 AAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812 | |||||||| || |||||| || | || || ||||||||| | |||||||| || || Sbjct 8844487 GATGTTTGAACGACTTCTGCGATCCATCTACGCTCCTCAGAACGTCTACTGTGTGCATGT 8844428 Query 107813 GGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCC 107871 ||| |||||| || || || ||||| | |||| || || || | |||| || | Sbjct 8844427 GGACCAGAAGTCGCCGGAGGAATTTCACA-AGGCCGTGGCGGGGATCGCTGCCTGTTTTC 8844369 Query 107872 CCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGC 107931 |||| || ||||| ||||||||||| | || || || || || ||| || |||| | Sbjct 8844368 CCAACGTGTTCATCGCCAGTAAGTTAGAAAACGTCGTGTACGCGTCTTGGACCCGAGTCC 8844309 Query 107932 AAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGTACTT 107989 ||||||| |||||||| ||||| || |||| || ||| | || |||||||| | Sbjct 8844308 AAGCTGATCTGAACTGCATGGAGGATCTGCT--GAAGTCCAGCGTCAAGTGGAAGTATCT 8844251 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||||| || || || |||||||| ||||| || ||||| | ||| || || | ||| || Sbjct 8844250 GCTGAACACCTGTGGCACAGACTTTCCCATTAAAACCAACGGCGAAATCGTACAGGCACT 8844191 Query 108050 CAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG 108086 |||| ||||| || | |||||| |||||| | ||| Sbjct 8844190 GAAGACCTTGAATGGGAGGAACAGCATGGAGACGGAG 8844154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348142979515782