Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 3e-14 >seq19 Length=17744385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| ||||||||||| || |||| | || |||| Sbjct 3993452 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCATCTTCCA 3993393 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| || || || |||| || || || ||||| || | || ||||||||| | Sbjct 3993392 GCTGTTTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 3993333 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 3993332 TCTTTGCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGC 3993273 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || ||||| |||||||| ||||| Sbjct 3993272 CAGTGAGGGTCTTTACAAAGATCTGCAT 3993245 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||||| || || | ||| || ||| ||||||||| ||||||||||| Sbjct 2910351 CCCCCTCTCAATCGTAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 2910410 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | | |||| || || || || || || | ||||| ||||| || || Sbjct 2910411 AGGGTGCGACCACCTTCCAACTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 2910470 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || ||| ||||| ||||| | | | | | || | |||||| Sbjct 2910471 ATCCCTTCTTTATCCTGGATTTTGGCCTTAATGTTCTCTATGGTATCACTTGGTTCCACC 2910530 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || ||||| || || |||||||| ||||| ||||| Sbjct 2910531 TCCAGGGTGATTGTTTTGCCAGTTAGCGTCTTCACGAAGATCTGCAT 2910577 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| ||||||||||| || ||| | || |||| Sbjct 3999185 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 3999126 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | |||||||||||| | Sbjct 3999125 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGA 3999066 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | | |||| | ||| || || | |||||| ||||||| Sbjct 3999065 TCTTTGCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGC 3999006 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || || || || |||||||| |||||| Sbjct 3999005 CAGTGAGGGTTTTGACAAAGATCTGCATG 3998977 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || |||||| ||| ||||| ||||||||||| ||| ||||| || |||||||| Sbjct 2910603 TGAAGCGTGGACTCTTTCTGGATGTTGTAGTCACACAGGGTTCGATCATCTTCCAGTTGC 2910662 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || | || || || | ||||| || || |||| | |||||||||||| ||||| Sbjct 2910663 TTAGCAGCAAAAATGAGACGCTGCTGATCTGGAGAGATTCCCTCCTTGTCCTGGATTTTA 2910722 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 || || | | ||||| | ||| ||||||| || || ||||| || ||| Sbjct 2910723 GATTTTACATTCTTGAAACTGTCACTTGGCTCAACCTCCAATGTTATGGTCTTCCCGGTC 2910782 Query 45314 AGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| ||||| || ||||| || Sbjct 2910783 AGGGTCTTAACAAACATCTGCATCTT 2910808 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || ||| | || ||||| ||||| || || || Sbjct 3993663 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 3993604 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | || ||||||||| ||||| ||| || | Sbjct 3993603 ATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTC 3993544 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | |||||| |||||||| || || || || || Sbjct 3993543 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACG 3993484 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 3993483 AAGATCTGCATG 3993472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| || |||| | || |||| Sbjct 2912404 CAAGATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCCTCCA 2912463 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||| || || || | ||||| ||||| || || | ||||| |||||| | Sbjct 2912464 GCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCCTGGA 2912523 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || || || | | | | |||| | || || |||| ||| || ||||||| Sbjct 2912524 TCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACTTCCAAGGTGATGGTCTTGC 2912583 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| || |||||||| | ||||| Sbjct 2912584 CAGTCAGGGTTTTCACAAACACCTGCAT 2912611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394932469577503