Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq19 111 1e-19 seq14 82.4 6e-11 >seq19 Length=17744385 Score = 111 bits (122), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||||||||| ||||||||||||| || || || |||||||| || Sbjct 3998952 TGAAGCGTAGATTCTTTTTGGATGTTGTAGTCGGACAGAGTACGACCATCTTCCAGCTGC 3998893 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || || || ||||| ||| | ||||||||| || |||| Sbjct 3998892 TTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTA 3998833 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| ||||||| |||||| ||||| ||| ||| | ||||| || Sbjct 3998832 GCCTTTACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTG 3998773 Query 18303 AAT----GTTTTTACAAAAATTTGCAT 18325 | | || || |||||||| ||||| Sbjct 3998772 AGTGAGGGTCTTCACAAAAATCTGCAT 3998746 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||| | | | | |||||||| ||| Sbjct 3993447 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGGGCGGCCATCTTCCAGCTGT 3993388 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || ||||| ||||| ||| | ||||||||| || || | | Sbjct 3993387 TTGCCAGCAAAGATCAGCCTTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTT 3993328 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| |||||||| ||||| |||| ||||||| | ||||| || Sbjct 3993327 GCCTTCACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTG 3993268 Query 18303 AATGTTTTTACAAAAATTTGCATTTTT 18329 | || |||||||| || |||||| || Sbjct 3993267 AGGGTCTTTACAAAGATCTGCATTGTT 3993241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | | || | |||||||| ||| Sbjct 3993675 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGT 3993616 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || ||||| ||| | ||||||||| || |||| Sbjct 3993615 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATTTTG 3993556 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| |||| ||| ||| | ||||| || Sbjct 3993555 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 3993496 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||||| || || || ||||| Sbjct 3993495 AGGGTTTTGACGAAGATCTGCAT 3993473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||| | | || | |||||||| || Sbjct 3999180 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 3999121 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || ||||| ||| | ||| ||||| || || | | Sbjct 3999120 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTT 3999061 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| ||||| ||| ||| | ||||| || Sbjct 3999060 GCCTTTACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTGCCAGTG 3999001 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||||| ||||| || ||||| Sbjct 3999000 AGGGTTTTGACAAAGATCTGCAT 3998978 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| ||||||||||| ||||||||||||| | || || ||||||| ||| Sbjct 3995304 TGAAGTGTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGTACGACCGTCTTCCAGCTGT 3995245 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||| |||| || || || ||||| ||| | ||||||||| || Sbjct 3995244 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 3995195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 18091 TTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGT 18150 ||| || ||||||| || | || || | || || || || ||||| || ||||||| Sbjct 3999440 TTTATTGCCCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGT 3999381 Query 18151 AGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGAT 18210 |||| | | | | |||||||| || ||||| ||| |||| || || || |||| Sbjct 3999380 AGTCAGAAAGGGAGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGAT 3999321 Query 18211 CCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGG 18270 | ||| | ||||||||| || |||| ||| || | ||| ||||||| || Sbjct 3999320 CAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTGTCACTGG 3999261 Query 18271 GCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| ||| ||| | ||||| || | ||||| || || || ||||| Sbjct 3999260 GCTCTACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 3999206 >seq14 Length=28847931 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || || || ||||||||||| | | || | ||||||||| ||| Sbjct 12556723 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCTTCCAACTGT 12556782 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || | || || || ||| | ||||| ||||| || | Sbjct 12556783 TTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGATCTTG 12556842 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | ||| || |||| |||||| ||| | |||||| | ||||| ||| Sbjct 12556843 GCCTTGACATTTTCAATGGTATCACTGGGCTCCACTTCCAGAGTGATGGTCTTGCCAGTC 12556902 Query 18303 AATGTTTTTACAAAAATTTGCATTT 18327 | || || ||||| |||||||||| Sbjct 12556903 AGGGTCTTCACAAAGATTTGCATTT 12556927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379206952852035