Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 567 9e-157 seq18 96.9 4e-15 seq7 96.9 4e-15 seq19 89.7 6e-13 >seq4 Length=20010643 Score = 567 bits (628), Expect = 9e-157 Identities = 1297/1948 (67%), Gaps = 27/1948 (1%) Strand=Plus/Plus Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTT 62383 |||||| || || || |||| | | |||||| || | || | || ||||| ||||| Sbjct 16959824 ATTCTTCATTTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTT 16959883 Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 || | ||||| |||||||||| ||||| || ||||| || || ||||| || || || Sbjct 16959884 CACGATCTGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTC 16959943 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 16959944 GATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCAG 16960003 Query 62504 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAG 62563 | ||| || || | || | | | ||| || || || || | |||| | ||| || Sbjct 16960004 CAGACTGTTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCCCAGTCCCACAG 16960063 Query 62564 ATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGT 62616 || | || | | ||| || || || || || || ||| | Sbjct 16960064 GTCTGTGGGCGTCTTCTCCCACATGTCG-------TACTGAAGGATGCCCTTGCTGACTG 16960116 Query 62617 ACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTA 62676 || ||| | || || ||||| || || || |||| || | || || ||||||| Sbjct 16960117 GAGACCCTTCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCAGCTGGCCTCTA 16960176 Query 62677 ATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTAT 62736 || |||| || ||||| || ||||| | | || || || ||||| ||||| | Sbjct 16960177 GGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGGGCTTT 16960236 Query 62737 CAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAG 62796 |||| || || | || || || ||||| || | || || |||||||| || || | Sbjct 16960237 CAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTG 16960296 Query 62797 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62856 | || || | ||| || ||| ||||||| || || | |||||| || || || ||||| | Sbjct 16960297 GCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGCACAGGATAGTAGTTGATGTCTATGA 16960356 Query 62857 TTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62916 | || || ||||||||||| || || ||| ||| | |||||||| || ||| | Sbjct 16960357 TCTTGTTCAGATTTCTGACGATCACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATAAG 16960416 Query 62917 GCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCT 62973 || ||| | || ||||||| | || | || ||||||||||| ||||| |||| Sbjct 16960417 TCCGCTCTGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAAACGGCCACCT 16960476 Query 62974 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTA 63033 | | | | || | | || || ||||| || || || |||||||| || || | Sbjct 16960477 CGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGATGGTGCCCA 16960536 Query 63034 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 63093 || || || || ||||| |||| || || || || || || ||| | || ||||| | Sbjct 16960537 GGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTACCGG 16960596 Query 63094 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT 63153 |||| |||| || || || || || | ||| | | ||||||| | | || Sbjct 16960597 TTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCACGCGCTTCA 16960656 Query 63154 ATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63213 |||| ||| | || || ||| || | ||||||| || ||||| | || Sbjct 16960657 CCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCCTCGAACTTCTCCCCCCAGCACTCGT 16960716 Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTCG 63271 ||| | ||||| ||| |||||||| | ||||| || || | ||| ||| | Sbjct 16960717 CCAGACCGGGACACTCACTGGGACACATGAGTGACCAGTCCTGGT--TGCTTTCCACCCT 16960774 Query 63272 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 ||||| || || ||||| ||||| | || || ||||||| | ||| || ||||| Sbjct 16960775 CTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTCTCTGCTCCTC 16960834 Query 63332 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63391 || ||||| ||||| |||||||| ||||| | | | ||| ||||||| || ||||| Sbjct 16960835 CTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGCCAGGGCTCCAA 16960894 Query 63392 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63451 ||| ||||| | ||||||| || ||||| || |||||||| | ||| | || ||||| Sbjct 16960895 GTAAATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCACGTAGCGCGCTGTGTT 16960954 Query 63452 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 ||||| ||||||| ||| || | | |||||||| | || ||||| || | ||| || Sbjct 16960955 GTTATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTCCCAGCGATGTA 16961014 Query 63512 GCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 || ||| ||| | || |||| | | ||| || || || ||| || ||||| Sbjct 16961015 GCTCCCAGTGGATCTGATGCAGCTAACGGCCACACCGATGCCGCCGGCCGACTTGGAGAT 16961074 Query 63572 TAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAG 63631 | ||||| || | |||||||||||||||||| ||||| || || ||||| || Sbjct 16961075 GAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCTTCGATGCTGTCGTCCTTCATGGCCAG 16961134 Query 63632 TAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691 || || ||||| |||| ||| | || | ||||| || || || | || || || || Sbjct 16961135 CAGGAAGCAGCTGGACAGCTGGGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGTGACGC 16961194 Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63751 ||| || ||||| || || || || || ||||| || | || || | ||| ||||| Sbjct 16961195 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTATTGATGGCGGCGTCGATATCATT 16961254 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 | || || || || | || ||||| | ||||||||| || | || | | |||| Sbjct 16961255 CTTGTGGATACCAACAGACACCCGCATGAGCATGTGCTGGGGACGCTCTGCCACTTTGCC 16961314 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63871 ||| || |||| || |||||| | |||| ||| || || ||||| ||||||| || || Sbjct 16961315 GTTGATCTTCAGCAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 16961374 Query 63872 GTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT 63931 ||||| |||||||| || |||| || || || || | | || ||| |||| Sbjct 16961375 GTCTCTGTCGTAAATGATGGCCGAGTTCAGGCGGTCTTTGTTCTCCAGAATTATGTCCAG 16961434 Query 63932 GGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGTTGAA 63988 || | ||| || || || || || || | | || | || || ||||||||| | Sbjct 16961435 AGT-CTCCTTGGAGATCATGGGGGA--GTGACGTTTGTTCAGGGGGTTGACATAGTTGTA 16961491 Query 63989 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGC 64048 | || |||||||||||| | || | || || || |||||||| || || || | || Sbjct 16961492 CAGGTCTTCCATCACTTCATTGAACACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACAGC 16961551 Query 64049 TATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 64108 || | || || || |||||||| || || |||| || || ||||| | || || Sbjct 16961552 GATGCGTGCAGCCAGGATGGCATAGTCGGGGTGTTTGGTTGTGAGGGTGGCAGTGATCTC 16961611 Query 64109 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64168 || ||||| ||||||| || || || || |||||||| || | || || || ||||| Sbjct 16961612 TGCGGCCAGTGTGTCCAGCTCAACTGTGGTCACTCCATTGTACAGACCCTGGATCACCTT 16961671 Query 64169 CATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAAT 64228 ||| | || | ||||| | || | ||| | ||||||||| | || || Sbjct 16961672 CATGGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGGCCATAGCAGAGCTTCTGGAT 16961731 Query 64229 ACGAGACGTGATTTTATCAAACATGACA 64256 |||||| |||||||| |||||||||||| Sbjct 16961732 ACGAGAGGTGATTTTGTCAAACATGACA 16961759 >seq18 Length=15207555 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || ||||| | || || || ||||||||||| | ||| | Sbjct 10925818 CCTCATCTCTGCTGATCAGCTCATTAGAGTAGGTAAGCCCAGGCATTAGGCCTCTCTTCT 10925759 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| | |||| ||||||||| || || || |||||||| || || |||||||||| Sbjct 10925758 TGAGCCAGTAGATGGCAGCGAATGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGG 10925699 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||| || Sbjct 10925698 CCACAATTCGCTCACC 10925683 >seq7 Length=13814722 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || || || || | |||||||| ||||||||||| | Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || |||| |||||| || || || ||||| ||||| || ||||||||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCACTGCAGCAAAGG 13788558 Query 33724 C 33724 | Sbjct 13788557 C 13788557 >seq19 Length=17744385 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 64008 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATG 64067 || || | ||| || || || || || || || || | ||||||| || ||||||||| Sbjct 13832062 CTGAAAACTTTCTTGGTCTCTTTATGCAGGTTGGACACAGCTATTCGTGCAGCTAGAATG 13832003 Query 64068 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64127 || || || ||||||| || || ||||||||| | || ||||||||| |||| | Sbjct 13832002 GCGTAGTCTGGATGTTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAACATCCAGT 13831943 Query 64128 TCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || || ||| | || | || ||||| |||||||| Sbjct 13831942 TCCACAGTGGTGACCCCACTGTAAAGACCCTGAATCACCTTCAT 13831899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629584228961040