Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 560 1e-154 seq7 96.9 5e-15 seq19 84.2 3e-11 >seq4 Length=20010643 Score = 560 bits (620), Expect = 1e-154 Identities = 1313/1975 (66%), Gaps = 21/1975 (1%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| ||||||||| | || || | | |||||| || || || |||| | | ||| Sbjct 16959794 CTGGATGGATCCATTGTGGGCGATCAGCTGATTCTTCATTTCCTCGCTCCACAGTCCTCT 16959853 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | || | || ||||| || || || | || || |||||||||| ||||| Sbjct 16959854 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCT 16959913 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || || || | ||||| || || |||| || || || Sbjct 16959914 GCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 16959973 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | ||| || || | || | | | ||| Sbjct 16959974 GGTGGAGGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGAT 16960033 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | |||| | ||| || || | || | | Sbjct 16960034 CTTCTCCTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGG--CGTCTTCTCCCACATGTCG 16960091 Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 | || || || || || ||| | || ||| | || || || || || || || Sbjct 16960092 TACTGAAGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCT 16960151 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 |||| || || || || ||||||| || |||| || ||||| |||||||| | | Sbjct 16960152 GCAGCCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATG 16960211 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || ||||| |||| ||||| || || | || || || |||||||| Sbjct 16960212 TTGAGCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCC 16960271 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 | || || |||||||| || || || || || | ||| || ||| ||||||| || || Sbjct 16960272 AGACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGC 16960331 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | |||||| || || || ||||| || || || ||||||||||| || || ||| ||| Sbjct 16960332 ACAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACC 16960391 Query 65685 TCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACA 65741 | |||||||| || ||| | ||||| | || ||||||| | || | Sbjct 16960392 TGTGTCAGTTTGTTGAAGTCATAAGTCCGCTCTGGGGTGACGTACATGTTGAGAGCGATG 16960451 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || ||||||||||||||||| ||||| | | | || | | || || ||||| Sbjct 16960452 GACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCAC 16960511 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 || || || ||||||||||| || | || || || || ||||| |||| || || || Sbjct 16960512 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 16960571 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 || || || ||| | || ||||| ||||| |||| || || || || || | ||| | Sbjct 16960572 TTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGC 16960631 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTA--TAGTGTATACAATC 65979 | ||||||| | | || ||| ||| | || || ||||||| | | Sbjct 16960632 TGTTGAGCCTTCACCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCC 16960691 Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 66039 ||||||| || ||||| | ||||| || ||||| ||| |||||||| | | Sbjct 16960692 --TCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTG 16960749 Query 66040 ACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 |||| || || | ||| ||| | ||||| || || ||||| ||||| | || Sbjct 16960750 ACCAGTCCTGGT--TGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTA 16960807 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 || | ||||| | ||| || ||||| || ||||| ||||| |||||||| ||||| | Sbjct 16960808 GAAGAGATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTC 16960867 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | | ||||||||||| || |||||||| ||||| | ||||||| || ||||| || Sbjct 16960868 AAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCC 16960927 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 |||||||| | ||| | || ||||| ||||| ||||||| ||| || | | || || Sbjct 16960928 ACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTT 16960987 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAG 66337 || | || |||||||| | ||| ||||| ||| | | | || |||| | | Sbjct 16960988 TGAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAACGGCCAC 16961047 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||| || || || ||| || ||||| | ||||| || | ||| ||||||||||| Sbjct 16961048 ACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCC 16961107 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 || || || || ||| ||||| || || || ||||| |||| ||| | || | || Sbjct 16961108 TTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTGGT 16961167 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 ||| || || || | || || || ||||| || ||||| || || || || || ||||| Sbjct 16961168 TCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 16961227 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 || | || || | ||| ||||| | || || || || | || ||||| | ||| Sbjct 16961228 GGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAGCAT 16961287 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 |||||| || | || | | ||| ||| || |||| || |||||| | |||| ||| Sbjct 16961288 GTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCTCTCCAGAGT 16961347 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 || || ||||| ||||||| || ||||||| |||||||| || ||||||| || Sbjct 16961348 CTTGAAGCCAAAGAAGTTGTAGGAGAAGTCTCTGTCGTAAATGATGGCCGAGTTCAGGCG 16961407 Query 66698 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCC 66756 || || | | || || |||| || | ||| || || || || || || | Sbjct 16961408 GTCTTTGTTCTCCAGAATTATGTCCAGAGT-CTCCTTGGAGATCATGGGGGA--GTGACG 16961464 Query 66757 CATTTTTA--GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 66814 | || | || |||||||||||| | | || |||||||||||| | || | || || Sbjct 16961465 TTTGTTCAGGGGGTTGACATAGTTGTACAGGTCTTCCATCACTTCATTGAACACCTTCTT 16961524 Query 66815 tGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 || || ||||| || || || || || || | || || | |||||||| || || || Sbjct 16961525 GGTCTCCTTGTGCAGGTTGGAGACAGCGATGCGTGCAGCCAGGATGGCATAGTCGGGGTG 16961584 Query 66875 TTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 66934 || || || ||||| | || || || ||||| ||||||| || || || || || Sbjct 16961585 TTTGGTTGTGAGGGTGGCAGTGATCTCTGCGGCCAGTGTGTCCAGCTCAACTGTGGTCAC 16961644 Query 66935 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 66994 |||||| || | || ||||| |||||||| | || | ||||| | |||| Sbjct 16961645 TCCATTGTACAGACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGA 16961704 Query 66995 GTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACA 67049 ||| | |||||| || | || |||||||| |||||||| |||||||||||| Sbjct 16961705 GTTCAGGCCATAGCAGAGCTTCTGGATACGAGAGGTGATTTTGTCAAACATGACA 16961759 >seq7 Length=13814722 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | || ||||| || || | |||||||| ||||||||||| | Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || |||| || || || ||||| ||||||||||| || ||||| ||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCACTGCAGCAAAGG 13788558 Query 36300 C 36300 | Sbjct 13788557 C 13788557 >seq19 Length=17744385 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| ||||| || |||||||| ||||||||||| | || || || || ||||| || Sbjct 13834222 ATCTCTGTGCACAGGTTACTACATTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTG 13834163 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 65905 || || || ||||| || || ||| | ||||| || ||||| |||| || || || Sbjct 13834162 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCTGTTTCTGTCTGTGACTCAAT 13834107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657928922296120