Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq17 150 1e-31 >seq17 Length=16464107 Score = 150 bits (166), Expect = 1e-31 Identities = 189/254 (74%), Gaps = 8/254 (3%) Strand=Plus/Plus Query 91808 GTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA-CTGGAACA 91866 ||||| |||| |||||||||| || ||||||| ||||| | | | ||| || || | Sbjct 11619716 GTCTTCGCCTGTAAAGAGGACTGTAAGATCATCACAGACACCGCC-GCCAAGCTTGAGCG 11619774 Query 91867 AAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCTGCGCAACTC 91926 || ||||||||||||||||| |||| || ||||| || ||||| |||||| | || | Sbjct 11619775 CAGCGGCTTCTACTGGGGTCCGCTGGGAGTGGAGGACGCTCATCGCATGCTGAGGGACGC 11619834 Query 91927 GGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTTCACGCTGTC 91986 ||||||||||||| ||||| || || || |||| || |||||||| ||||| ||||| Sbjct 11619835 TCCACTGGGCAGCTTCCTCATCCGCGACAGTCGGCAGAAAGACGTCTTCTTCACTCTGTC 11619894 Query 91987 GTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGACAAGCAA---TT 92043 || ||| | || ||||| |||| ||| | || || ||||| || ||||| || Sbjct 11619895 CTACCACGCCAAGAGTGGACCGGTCAACGTGCGCATAGACTACAA--AC-AGCAAAAGTT 11619951 Query 92044 TTCCTTGGCTGGGA 92057 || ||||| |||| Sbjct 11619952 CTCATTGGCGGGGA 11619965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356104902040129