Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 556 2e-153 seq7 102 1e-16 seq18 95.1 2e-14 >seq4 Length=20010643 Score = 556 bits (616), Expect = 2e-153 Identities = 1317/1975 (67%), Gaps = 21/1975 (1%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| ||||||||| | || || | | |||||| || || || |||| | | ||| Sbjct 16959794 CTGGATGGATCCATTGTGGGCGATCAGCTGATTCTTCATTTCCTCGCTCCACAGTCCTCT 16959853 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | || | || ||||| || || || | || || |||||||||| ||||| Sbjct 16959854 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCT 16959913 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || || || | || || || || |||| || || || Sbjct 16959914 GCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 16959973 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || || || ||||| || |||| || | ||| || || | || | | ||| Sbjct 16959974 GGTGGAGGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGAT 16960033 Query 79206 TTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCAT 79264 || || || || |||| ||||| || || | || | | | | ||| | || | Sbjct 16960034 CTTCTCCTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGGCGTCTTC-TCCCACATGTCGT 16960092 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 | || || || || || || | || ||| ||| || ||||| || || || | Sbjct 16960093 ACTGAAGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCTG 16960152 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 | || | || || || ||||||| || |||| || ||||| ||||| || | | | Sbjct 16960153 CAGCCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGT 16960212 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 |||| || ||||| |||| ||||| || || | || || || |||||||| | Sbjct 16960213 TGAGCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCA 16960272 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 || || |||||||| || || || || || | ||| || || ||||||| || || | Sbjct 16960273 GACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGCA 16960332 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 |||||| || || || ||||| || || || ||||| ||||| || || ||| ||| | Sbjct 16960333 CAGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCT 16960392 Query 79565 CCTTTAGTTTGAGAAAATCAAATCGTCCA-TCTA---TTACAAACATGTTCAACGCGACA 79620 | |||||| || ||| | |||| ||| | || ||||||| | |||| Sbjct 16960393 GTGTCAGTTTGTTGAAGTCATAA-GTCCGCTCTGGGGTGACGTACATGTTGAGAGCGATG 16960451 Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || ||||||||||||||||| ||||| | | | || | | ||||| ||||| Sbjct 16960452 GACGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCAC 16960511 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 ||||| || ||||| ||||| || | || || || || ||||| |||| || || || Sbjct 16960512 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 16960571 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || || || ||| | || ||||| ||||| |||| || || || || || | ||| | Sbjct 16960572 TTGTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGC 16960631 Query 79801 ACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTA--TTGTGTATATAATC 79858 | ||||||| | | ||| ||| ||| | || || | ||||| | | Sbjct 16960632 TGTTGAGCCTTCACCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCC 16960691 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 ||||||| || ||||| ||||| | || ||||| || |||||||| | | Sbjct 16960692 --TCGAACTTCTCCCCCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTG 16960749 Query 79919 ACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 |||| || | | |||| || | ||||| || || ||||| ||||| | || Sbjct 16960750 ACCAGTCCTGGT--TGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTA 16960807 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 || ||||||| | ||| |||||||| || ||||| ||||| |||||||| ||||| | Sbjct 16960808 GAAGAGATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTC 16960867 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | | ||| ||||||| || |||||||| ||||| | |||| || || ||||| || Sbjct 16960868 AAAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCC 16960927 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 |||||||| | ||| | || ||||| ||||| ||||||| ||| || | | || || Sbjct 16960928 ACCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTT 16960987 Query 80157 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 80216 || | || |||||||| | ||| ||||| ||| ||| | || |||| | | Sbjct 16960988 TGAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAACGGCCAC 16961047 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || ||| || ||||| | ||||| || | ||| ||||||||||| Sbjct 16961048 ACCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCC 16961107 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || ||||| || || ||||| || || || ||||| |||| ||| | || | || Sbjct 16961108 TTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTGGT 16961167 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 ||| || || || | || || || ||||| || ||||| || || ||||| || ||||| Sbjct 16961168 TCCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 16961227 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 || | || || | || ||||| | || || || || | || ||||| | ||| Sbjct 16961228 GGTATTGATGGCGGCGTCGATATCATTCTTGTGGATACCAACAGACACCCGCATGAGCAT 16961287 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 |||||| || | || | | ||| || || |||| || ||| || | |||| ||| Sbjct 16961288 GTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCTCTCCAGAGT 16961347 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || ||||| ||||||| || ||||||| |||||||| || ||||||| || Sbjct 16961348 CTTGAAGCCAAAGAAGTTGTAGGAGAAGTCTCTGTCGTAAATGATGGCCGAGTTCAGGCG 16961407 Query 80577 ATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCC 80635 || || | | || || |||| || | ||| || || || || || || | Sbjct 16961408 GTCTTTGTTCTCCAGAATTATGTCCAGAGT-CTCCTTGGAGATCATGGGGGA--GTGACG 16961464 Query 80636 CATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 80693 | || | || || ||||||||| | | || |||||||||||| | || | || || Sbjct 16961465 TTTGTTCAGGGGGTTGACATAGTTGTACAGGTCTTCCATCACTTCATTGAACACCTTCTT 16961524 Query 80694 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || |||||||| || || || || || || | || || | |||||||| || || || Sbjct 16961525 GGTCTCCTTGTGCAGGTTGGAGACAGCGATGCGTGCAGCCAGGATGGCATAGTCGGGGTG 16961584 Query 80754 TTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 80813 || || || ||||| | || || || ||||| ||||||| || || || || || Sbjct 16961585 TTTGGTTGTGAGGGTGGCAGTGATCTCTGCGGCCAGTGTGTCCAGCTCAACTGTGGTCAC 16961644 Query 80814 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 80873 |||||| || | || ||||| |||||||| | || | ||||| | |||| Sbjct 16961645 TCCATTGTACAGACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGA 16961704 Query 80874 GTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGACA 80928 ||| | |||||| || | || |||||||| |||||||| |||||||||||| Sbjct 16961705 GTTCAGGCCATAGCAGAGCTTCTGGATACGAGAGGTGATTTTGTCAAACATGACA 16961759 >seq7 Length=13814722 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || || ||||| || || | |||||||| ||||||||||| | Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || |||| || || || ||||| ||||| ||||| || ||||| ||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCACTGCAGCAAAGG 13788558 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 13788557 CCACCACCCGCTCTCC 13788542 >seq18 Length=15207555 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || || || || | || || || ||||||||||| | ||| | Sbjct 10925818 CCTCATCTCTGCTGATCAGCTCATTAGAGTAGGTAAGCCCAGGCATTAGGCCTCTCTTCT 10925759 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| | |||| || ||||| ||||| || |||||||| || || || ||||||| Sbjct 10925758 TGAGCCAGTAGATGGCAGCGAATGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGG 10925699 Query 50102 CAACAAGTCTCTCTCC--ATAACTGG 50125 | |||| || ||| || |||| ||| Sbjct 10925698 CCACAATTCGCTCACCTAATAAATGG 10925673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718002654474520