Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 545 3e-150 seq19 98.7 1e-15 seq7 93.3 6e-14 seq18 84.2 3e-11 >seq4 Length=20010643 Score = 545 bits (604), Expect = 3e-150 Identities = 1320/1992 (66%), Gaps = 23/1992 (1%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| ||||||||| | || || | | ||| || || || || |||| | | ||| Sbjct 16959794 CTGGATGGATCCATTGTGGGCGATCAGCTGATTCTTCATTTCCTCGCTCCACAGTCCTCT 16959853 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || |||||||| || || | || || |||||||||| ||||| Sbjct 16959854 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTCACGATCTGGAACTCTCCAGACAGAACTCT 16959913 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || || || | ||||| || || |||| || || || Sbjct 16959914 GCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 16959973 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || ||||| || || | |||||| ||| Sbjct 16959974 GGTGGAGGCTGTGGGCATGGGGGCCATCAGCAGACTGTTCCTGACTCCATGTTTGGAGAT 16960033 Query 71289 TTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNN 71348 || || || || |||| | ||| || || | || Sbjct 16960034 CTTCTCCTTCAGCAGGGCCCAGTCCCACAGGTCTGTGGGCGTCTTCTCCCACATGTCGTA 16960093 Query 71349 NNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTC 71408 ||||| || || | || ||| | || || || || || || | | | Sbjct 16960094 CTGAAGGATGCCCTTGCTGACTGGAGACCCTTCGTACGTCTCATAGGGGCCCAACTCTGC 16960153 Query 71409 GGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATT 71468 || || || || || ||||||| || | || || ||||| ||||| || | | || Sbjct 16960154 AGCCAGCTCGCAGCTGGCCTCTAGGGCGGCGTAGTAGATGGTCTCGAAGATTTGGATGTT 16960213 Query 71469 GAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 71528 ||| || ||||| ||||| ||||| || || | || || || |||||||| | Sbjct 16960214 GAGCAGCTGAGCTTCAGGGCTTTCAAAAGGGAAACGCATCAGGATGAAGGCGTCTGCCAG 16960273 Query 71529 TCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAAT 71588 || || || ||||| || || || ||||| | ||| || || ||||||| || || | Sbjct 16960274 ACCCTGGACACCAATTCCTATTGGCCTGTGGCGCTTGTTGGAGTTTTCAGCCTCGGGCAC 16960333 Query 71589 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATC 71648 |||||| || || || ||||| || || || ||||||||||| || || ||| ||| | Sbjct 16960334 AGGATAGTAGTTGATGTCTATGATCTTGTTCAGATTTCTGACGATCACCTTGGTCACCTG 16960393 Query 71649 CTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGA 71705 | |||||| || ||| | ||| ||| | || ||| ||| | || | || Sbjct 16960394 TGTCAGTTTGTTGAAGTCATAAGTCCGCTCTGGGGTGACGTACATGTTGAGAGCGATGGA 16960453 Query 71706 TGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAG 71765 ||||||||||||||||| ||||| | | || || | | ||||| ||||| || Sbjct 16960454 CGCCAGATTACAAACGGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAG 16960513 Query 71766 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 71825 || || ||||||||||| || | || || || || ||||| |||| || || || || Sbjct 16960514 GTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 16960573 Query 71826 ATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 71885 || || || | || ||||| ||||| |||| || || || || || | ||| | Sbjct 16960574 GTAGAGCATGTAGGGCGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTG 16960633 Query 71886 TCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA--TTGTGTATATAATCGT 71943 | ||||||| | | ||| ||| ||| | || || | ||||| | | Sbjct 16960634 TTGAGCCTTCACCACGCGCTTCACCCTCCCTTCCTTCTCATACCTAGTGTAGAGCTCC-- 16960691 Query 71944 TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||||||| || ||||| ||| | ||| | || ||||| ||| | |||||||| | ||| Sbjct 16960692 TCGAACTTCTCCCCCCA-GCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTGA 16960750 Query 72003 CCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 ||| || | | ||| || | ||||| || || ||||| ||||| | || Sbjct 16960751 CCAGTCCTGGT--TGCTTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAG 16960808 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || ||||||| | ||| |||||||| || ||||| ||||| |||||||| ||||| | Sbjct 16960809 AAGAGATCTCGCGCTCTCTGCTCCTCCTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTCA 16960868 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | ||| ||||||| || |||||||| ||||| | |||| || || ||||| || Sbjct 16960869 AAGACGTCATAATGCCAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCCA 16960928 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 |||||||| | ||| | || ||||| ||||| ||||||| ||| || | | || || Sbjct 16960929 CCCTGATCCACGTAGCGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTT 16960988 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGA 72300 || || |||||||| | ||| ||||| ||| ||| | || ||||| | | | Sbjct 16960989 GAGTTTCCGTTGGTCCCAGCGATGTAGCTCCCAGTGGATCTGATGCAGCTAACGGCCACA 16961048 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || ||| || ||||| | ||||| || | ||| ||||||||||| Sbjct 16961049 CCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCAGTTCTTCAGCGTGTCATAGATGCCT 16961108 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || || || ||| ||||| || || || ||||| |||| ||| | || | ||| Sbjct 16961109 TCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGGGGCCGGTTGGTT 16961168 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || || || || | || || || ||||| || ||||| || || ||||| || ||||| Sbjct 16961169 CCTGCGTTGAAGAGCGTGGGTGACGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAG 16961228 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGT--ATTCCTACCGCGACACGCATTAACA 72538 || | || || | || |||| |||| ||| || || || | || ||||| | || Sbjct 16961229 GTATTGATGGCGGCGTCGATAT--CATTCTTGTGGATACCAACAGACACCCGCATGAGCA 16961286 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || | | ||| || || |||| || |||||| | |||| || Sbjct 16961287 TGTGCTGGGGACGCTCTGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCTCTCCAGAG 16961346 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| ||||||| || ||||||| |||||||| || |||| || || Sbjct 16961347 TCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCTCTGTCGTAAATGATGGCCGAGTTCAGGC 16961406 Query 72659 TATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTC 72717 || || | | || ||| |||| || | ||| || || || || || || | Sbjct 16961407 GGTCTTTGTTCTCCAGAATTATGTCCAGAGT-CTCCTTGGAGATCATGGGGGA--GTGAC 16961463 Query 72718 CCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 72775 | || | || || ||||||||| | | || |||||||||||| | || | || | Sbjct 16961464 GTTTGTTCAGGGGGTTGACATAGTTGTACAGGTCTTCCATCACTTCATTGAACACCTTCT 16961523 Query 72776 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGAT 72835 | || |||||||| || || || || || || | || || || |||||||| || || | Sbjct 16961524 TGGTCTCCTTGTGCAGGTTGGAGACAGCGATGCGTGCAGCCAGGATGGCATAGTCGGGGT 16961583 Query 72836 GTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 72895 ||| || || ||||| | || ||||| ||||| ||||||| || || || || | Sbjct 16961584 GTTTGGTTGTGAGGGTGGCAGTGATCTCTGCGGCCAGTGTGTCCAGCTCAACTGTGGTCA 16961643 Query 72896 CTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAG 72955 ||||||| || | || ||||| |||||||| | || | ||||| | |||| Sbjct 16961644 CTCCATTGTACAGACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAG 16961703 Query 72956 TGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACATTTT 73015 ||| | |||||| || | || |||||||| |||||||| |||||||| ||| | Sbjct 16961704 AGTTCAGGCCATAGCAGAGCTTCTGGATACGAGAGGTGATTTTGTCAAACATGACACGCT 16961763 Query 73016 CCCGGCATCCAT 73027 | ||| ||||| Sbjct 16961764 CTTGGCGTCCAT 16961775 >seq19 Length=17744385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 72763 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822 || || | ||| || || || || || || || || || ||||||| || ||||||||| Sbjct 13832062 CTGAAAACTTTCTTGGTCTCTTTATGCAGGTTGGACACAGCTATTCGTGCAGCTAGAATG 13832003 Query 72823 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAAT 72882 || || |||||||||| || || ||||||||| | |||||||||||| |||| | Sbjct 13832002 GCGTAGTCTGGATGTTTGGTGGTGAGAGTGGCTGCCGTCTCTGCTGCCAGAACATCCAGT 13831943 Query 72883 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || || ||| | || | || || || |||||||| Sbjct 13831942 TCCACAGTGGTGACCCCACTGTAAAGACCCTGAATCACCTTCAT 13831899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || | |||||| ||| | || ||||||||||| || | Sbjct 13835982 TCCAGCCATAGAAGTGCATGCTGCTCAGTTTGCCGTAGTTGGGCTCGGCTATGTGGATGT 13835923 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || || |||||| | || || | ||||| ||||| || | || || | Sbjct 13835922 TGAGAGACTGGCTCTGGTCGATGTAAGCGCCGCGATCTGCTGCCATCTTCAGGACAGTTT 13835863 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | |||||||||| |||| | ||| || |||| Sbjct 13835862 TCTGGGAGATTTCCCACACCGTTTTATAAAGCTGCTTCAGATCGTCAGGAA 13835812 >seq7 Length=13814722 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || ||||| || || | |||||||| ||||||||||| | Sbjct 13788677 CCTCATCTCTGCTGATCAGCTCATTGGAGAAGGTCAAGCCGGGCATCAGGCCACGCTTCT 13788618 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | || || || ||||| ||||| ||||| || ||||| ||||||| Sbjct 13788617 TCAACCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAAATTCCCTCCACTGCAGCAAAGG 13788558 Query 42207 C 42207 | Sbjct 13788557 C 13788557 >seq18 Length=15207555 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || || || | || || || ||||||||||| | ||| | Sbjct 10925818 CCTCATCTCTGCTGATCAGCTCATTAGAGTAGGTAAGCCCAGGCATTAGGCCTCTCTTCT 10925759 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| | || | || ||||| ||||| || |||||||| || || || ||||||| Sbjct 10925758 TGAGCCAGTAGATGGCAGCGAATGAACCAGAGAAAAAGATTCCCTCCACAGCAGCAAAGG 10925699 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||| || Sbjct 10925698 CCACAATTCGCTCACC 10925683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670890517758680